Experiment: Ceftazidime 0.15 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_812 and Pf6N2E2_813 are separated by 77 nucleotides Pf6N2E2_813 and Pf6N2E2_814 are separated by 212 nucleotides Pf6N2E2_814 and Pf6N2E2_815 overlap by 30 nucleotides
Pf6N2E2_812 - Glycosyltransferase, at 944,886 to 946,178
_812
Pf6N2E2_813 - Response regulator, at 946,256 to 946,561
_813
Pf6N2E2_814 - hypothetical protein, at 946,774 to 946,917
_814
Pf6N2E2_815 - Signal transduction histidine kinase, at 946,888 to 950,370
_815
Position (kb) 946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 946.138 kb on + strand at 946.138 kb on + strand at 946.138 kb on + strand at 946.138 kb on + strand at 946.139 kb on - strand at 946.342 kb on + strand, within Pf6N2E2_813 at 946.343 kb on - strand, within Pf6N2E2_813 at 946.527 kb on + strand, within Pf6N2E2_813 at 946.527 kb on + strand, within Pf6N2E2_813 at 946.527 kb on + strand, within Pf6N2E2_813 at 946.527 kb on + strand, within Pf6N2E2_813 at 946.527 kb on + strand, within Pf6N2E2_813 at 946.627 kb on + strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.628 kb on - strand at 946.690 kb on + strand at 946.690 kb on + strand at 946.690 kb on + strand at 946.691 kb on - strand at 946.724 kb on - strand at 946.737 kb on + strand at 946.737 kb on + strand at 946.738 kb on - strand at 946.739 kb on + strand at 946.740 kb on - strand at 946.742 kb on + strand at 946.775 kb on + strand at 946.776 kb on - strand at 946.782 kb on + strand at 946.819 kb on + strand, within Pf6N2E2_814 at 946.819 kb on + strand, within Pf6N2E2_814 at 946.819 kb on + strand, within Pf6N2E2_814 at 946.819 kb on + strand, within Pf6N2E2_814 at 946.820 kb on - strand, within Pf6N2E2_814 at 946.820 kb on - strand, within Pf6N2E2_814 at 946.820 kb on - strand, within Pf6N2E2_814 at 946.820 kb on - strand, within Pf6N2E2_814 at 946.944 kb on + strand at 946.944 kb on + strand at 946.944 kb on + strand at 947.005 kb on + strand at 947.005 kb on + strand at 947.005 kb on + strand at 947.006 kb on - strand at 947.146 kb on + strand at 947.184 kb on + strand at 947.185 kb on - strand at 947.185 kb on - strand at 947.240 kb on + strand, within Pf6N2E2_815 at 947.240 kb on + strand, within Pf6N2E2_815 at 947.240 kb on + strand, within Pf6N2E2_815 at 947.241 kb on - strand, within Pf6N2E2_815 at 947.241 kb on - strand, within Pf6N2E2_815 at 947.241 kb on - strand, within Pf6N2E2_815 at 947.241 kb on - strand, within Pf6N2E2_815 at 947.270 kb on - strand, within Pf6N2E2_815 at 947.270 kb on - strand, within Pf6N2E2_815 at 947.458 kb on + strand, within Pf6N2E2_815 at 947.458 kb on + strand, within Pf6N2E2_815 at 947.459 kb on - strand, within Pf6N2E2_815 at 947.497 kb on + strand, within Pf6N2E2_815 at 947.498 kb on - strand, within Pf6N2E2_815 at 947.498 kb on - strand, within Pf6N2E2_815 at 947.536 kb on + strand, within Pf6N2E2_815 at 947.536 kb on + strand, within Pf6N2E2_815 at 947.537 kb on - strand, within Pf6N2E2_815 at 947.537 kb on - strand, within Pf6N2E2_815 at 947.537 kb on - strand, within Pf6N2E2_815 at 947.537 kb on - strand, within Pf6N2E2_815 at 947.668 kb on - strand, within Pf6N2E2_815 at 947.668 kb on - strand, within Pf6N2E2_815 at 947.689 kb on + strand, within Pf6N2E2_815 at 947.690 kb on - strand, within Pf6N2E2_815 at 947.716 kb on + strand, within Pf6N2E2_815 at 947.758 kb on + strand, within Pf6N2E2_815 at 947.758 kb on + strand, within Pf6N2E2_815 at 947.759 kb on - strand, within Pf6N2E2_815 at 947.759 kb on - strand, within Pf6N2E2_815 at 947.814 kb on + strand, within Pf6N2E2_815 at 947.815 kb on - strand, within Pf6N2E2_815 at 947.864 kb on + strand, within Pf6N2E2_815
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.15 mg/ml remove 946,138 + -0.0 946,138 + -1.0 946,138 + -1.8 946,138 + -2.6 946,139 - +0.3 946,342 + Pf6N2E2_813 0.28 -1.0 946,343 - Pf6N2E2_813 0.28 +0.5 946,527 + Pf6N2E2_813 0.89 +0.3 946,527 + Pf6N2E2_813 0.89 -0.1 946,527 + Pf6N2E2_813 0.89 -1.1 946,527 + Pf6N2E2_813 0.89 +0.7 946,527 + Pf6N2E2_813 0.89 -0.3 946,627 + +0.9 946,628 - -0.6 946,628 - -1.1 946,628 - -0.5 946,628 - -0.5 946,628 - +0.1 946,628 - +0.1 946,628 - +0.7 946,690 + -0.5 946,690 + +1.9 946,690 + +1.3 946,691 - +2.5 946,724 - -2.5 946,737 + +0.8 946,737 + +1.1 946,738 - +0.5 946,739 + +1.1 946,740 - -1.7 946,742 + +0.2 946,775 + +0.7 946,776 - -0.6 946,782 + +1.3 946,819 + Pf6N2E2_814 0.31 -0.3 946,819 + Pf6N2E2_814 0.31 -2.8 946,819 + Pf6N2E2_814 0.31 +1.1 946,819 + Pf6N2E2_814 0.31 +0.2 946,820 - Pf6N2E2_814 0.32 -0.5 946,820 - Pf6N2E2_814 0.32 +0.5 946,820 - Pf6N2E2_814 0.32 -1.1 946,820 - Pf6N2E2_814 0.32 +0.0 946,944 + +1.3 946,944 + +1.3 946,944 + +1.1 947,005 + -1.5 947,005 + +0.9 947,005 + -0.8 947,006 - +0.1 947,146 + +2.5 947,184 + +1.3 947,185 - +0.6 947,185 - +0.2 947,240 + Pf6N2E2_815 0.10 +1.5 947,240 + Pf6N2E2_815 0.10 +1.0 947,240 + Pf6N2E2_815 0.10 +0.5 947,241 - Pf6N2E2_815 0.10 +0.2 947,241 - Pf6N2E2_815 0.10 -0.6 947,241 - Pf6N2E2_815 0.10 +0.1 947,241 - Pf6N2E2_815 0.10 -1.5 947,270 - Pf6N2E2_815 0.11 -1.9 947,270 - Pf6N2E2_815 0.11 +0.3 947,458 + Pf6N2E2_815 0.16 -0.8 947,458 + Pf6N2E2_815 0.16 +0.5 947,459 - Pf6N2E2_815 0.16 +0.2 947,497 + Pf6N2E2_815 0.17 -0.5 947,498 - Pf6N2E2_815 0.18 -0.9 947,498 - Pf6N2E2_815 0.18 +1.1 947,536 + Pf6N2E2_815 0.19 +0.9 947,536 + Pf6N2E2_815 0.19 -2.0 947,537 - Pf6N2E2_815 0.19 -0.1 947,537 - Pf6N2E2_815 0.19 +1.5 947,537 - Pf6N2E2_815 0.19 +1.0 947,537 - Pf6N2E2_815 0.19 +0.5 947,668 - Pf6N2E2_815 0.22 +0.9 947,668 - Pf6N2E2_815 0.22 -0.2 947,689 + Pf6N2E2_815 0.23 +0.5 947,690 - Pf6N2E2_815 0.23 +0.2 947,716 + Pf6N2E2_815 0.24 +0.4 947,758 + Pf6N2E2_815 0.25 +0.5 947,758 + Pf6N2E2_815 0.25 -0.9 947,759 - Pf6N2E2_815 0.25 -0.8 947,759 - Pf6N2E2_815 0.25 -1.0 947,814 + Pf6N2E2_815 0.27 -0.1 947,815 - Pf6N2E2_815 0.27 +0.3 947,864 + Pf6N2E2_815 0.28 -0.7
Or see this region's nucleotide sequence