Experiment: Ceftazidime 0.15 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_681 and Pf6N2E2_682 are separated by 112 nucleotides Pf6N2E2_682 and Pf6N2E2_683 are separated by 203 nucleotides
Pf6N2E2_681 - 4-hydroxyproline epimerase (EC 5.1.1.8), at 785,832 to 786,764
_681
Pf6N2E2_682 - Predicted regulator PutR for proline utilization, GntR family, at 786,877 to 787,548
_682
Pf6N2E2_683 - Probable MFS transporter, at 787,752 to 788,918
_683
Position (kb) 786
787
788 Strain fitness (log2 ratio) -2
-1
0
1
2 at 785.947 kb on + strand, within Pf6N2E2_681 at 785.947 kb on + strand, within Pf6N2E2_681 at 786.073 kb on + strand, within Pf6N2E2_681 at 786.074 kb on - strand, within Pf6N2E2_681 at 786.093 kb on + strand, within Pf6N2E2_681 at 786.093 kb on + strand, within Pf6N2E2_681 at 786.198 kb on + strand, within Pf6N2E2_681 at 786.206 kb on - strand, within Pf6N2E2_681 at 786.206 kb on - strand, within Pf6N2E2_681 at 786.206 kb on - strand, within Pf6N2E2_681 at 786.211 kb on + strand, within Pf6N2E2_681 at 786.355 kb on + strand, within Pf6N2E2_681 at 786.355 kb on + strand, within Pf6N2E2_681 at 786.408 kb on + strand, within Pf6N2E2_681 at 786.832 kb on - strand at 786.832 kb on - strand at 786.837 kb on + strand at 786.837 kb on + strand at 786.838 kb on - strand at 786.838 kb on - strand at 786.838 kb on - strand at 787.115 kb on + strand, within Pf6N2E2_682 at 787.116 kb on - strand, within Pf6N2E2_682 at 787.116 kb on - strand, within Pf6N2E2_682 at 787.116 kb on - strand, within Pf6N2E2_682 at 787.160 kb on - strand, within Pf6N2E2_682 at 787.160 kb on - strand, within Pf6N2E2_682 at 787.160 kb on - strand, within Pf6N2E2_682 at 787.160 kb on - strand, within Pf6N2E2_682 at 787.246 kb on + strand, within Pf6N2E2_682 at 787.247 kb on - strand, within Pf6N2E2_682 at 787.585 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.778 kb on - strand at 787.778 kb on - strand at 787.778 kb on - strand at 787.778 kb on - strand at 787.778 kb on - strand at 787.778 kb on - strand at 787.778 kb on - strand at 787.918 kb on + strand, within Pf6N2E2_683 at 787.919 kb on - strand, within Pf6N2E2_683 at 787.999 kb on + strand, within Pf6N2E2_683 at 788.092 kb on + strand, within Pf6N2E2_683 at 788.190 kb on - strand, within Pf6N2E2_683
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.15 mg/ml remove 785,947 + Pf6N2E2_681 0.12 -2.4 785,947 + Pf6N2E2_681 0.12 +0.7 786,073 + Pf6N2E2_681 0.26 -1.8 786,074 - Pf6N2E2_681 0.26 +0.4 786,093 + Pf6N2E2_681 0.28 +0.4 786,093 + Pf6N2E2_681 0.28 -1.9 786,198 + Pf6N2E2_681 0.39 -0.9 786,206 - Pf6N2E2_681 0.40 -1.1 786,206 - Pf6N2E2_681 0.40 -1.4 786,206 - Pf6N2E2_681 0.40 -1.0 786,211 + Pf6N2E2_681 0.41 +0.4 786,355 + Pf6N2E2_681 0.56 +0.1 786,355 + Pf6N2E2_681 0.56 +1.7 786,408 + Pf6N2E2_681 0.62 +0.7 786,832 - +0.9 786,832 - -0.6 786,837 + -2.0 786,837 + +0.2 786,838 - -1.2 786,838 - -0.3 786,838 - -0.2 787,115 + Pf6N2E2_682 0.35 -1.6 787,116 - Pf6N2E2_682 0.36 -0.7 787,116 - Pf6N2E2_682 0.36 +0.4 787,116 - Pf6N2E2_682 0.36 -0.6 787,160 - Pf6N2E2_682 0.42 -0.1 787,160 - Pf6N2E2_682 0.42 +0.0 787,160 - Pf6N2E2_682 0.42 -0.2 787,160 - Pf6N2E2_682 0.42 -0.1 787,246 + Pf6N2E2_682 0.55 -2.2 787,247 - Pf6N2E2_682 0.55 -0.2 787,585 + +1.1 787,777 + +0.1 787,777 + +2.1 787,777 + +1.6 787,777 + -1.8 787,778 - +0.9 787,778 - -0.1 787,778 - +1.1 787,778 - +1.1 787,778 - +1.0 787,778 - +0.8 787,778 - +0.6 787,918 + Pf6N2E2_683 0.14 +0.8 787,919 - Pf6N2E2_683 0.14 -0.0 787,999 + Pf6N2E2_683 0.21 +0.4 788,092 + Pf6N2E2_683 0.29 -0.4 788,190 - Pf6N2E2_683 0.38 -0.2
Or see this region's nucleotide sequence