Experiment: Ceftazidime 0.15 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_361 and Pf6N2E2_362 are separated by 11 nucleotides Pf6N2E2_362 and Pf6N2E2_363 are separated by 1 nucleotides
Pf6N2E2_361 - Peptide ABC transporter, permease protein, at 427,128 to 428,084
_361
Pf6N2E2_362 - Dipeptide transport system permease protein dppC, at 428,096 to 428,956
_362
Pf6N2E2_363 - ATPase components of various ABC-type transport systems, contain duplicated ATPase, at 428,958 to 430,802
_363
Position (kb) 428
429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.133 kb on + strand at 427.134 kb on - strand at 427.195 kb on + strand at 427.676 kb on + strand, within Pf6N2E2_361 at 427.676 kb on + strand, within Pf6N2E2_361 at 427.677 kb on - strand, within Pf6N2E2_361 at 427.677 kb on - strand, within Pf6N2E2_361 at 427.681 kb on - strand, within Pf6N2E2_361 at 427.885 kb on - strand, within Pf6N2E2_361 at 428.624 kb on + strand, within Pf6N2E2_362 at 428.625 kb on - strand, within Pf6N2E2_362 at 428.625 kb on - strand, within Pf6N2E2_362 at 428.625 kb on - strand, within Pf6N2E2_362 at 428.625 kb on - strand at 428.625 kb on - strand, within Pf6N2E2_362 at 428.664 kb on - strand, within Pf6N2E2_362 at 428.942 kb on - strand at 428.942 kb on - strand at 428.957 kb on + strand at 428.958 kb on - strand at 428.958 kb on - strand at 429.237 kb on + strand, within Pf6N2E2_363 at 429.237 kb on + strand, within Pf6N2E2_363 at 429.238 kb on - strand, within Pf6N2E2_363 at 429.238 kb on - strand, within Pf6N2E2_363 at 429.238 kb on - strand, within Pf6N2E2_363 at 429.585 kb on + strand, within Pf6N2E2_363 at 429.585 kb on + strand, within Pf6N2E2_363 at 429.585 kb on + strand, within Pf6N2E2_363 at 429.585 kb on + strand, within Pf6N2E2_363 at 429.586 kb on - strand, within Pf6N2E2_363 at 429.586 kb on - strand, within Pf6N2E2_363 at 429.586 kb on - strand, within Pf6N2E2_363 at 429.586 kb on - strand, within Pf6N2E2_363 at 429.586 kb on - strand, within Pf6N2E2_363 at 429.586 kb on - strand, within Pf6N2E2_363
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.15 mg/ml remove 427,133 + -0.9 427,134 - -0.6 427,195 + +0.1 427,676 + Pf6N2E2_361 0.57 -0.1 427,676 + Pf6N2E2_361 0.57 +0.1 427,677 - Pf6N2E2_361 0.57 -0.3 427,677 - Pf6N2E2_361 0.57 -1.9 427,681 - Pf6N2E2_361 0.58 -0.4 427,885 - Pf6N2E2_361 0.79 -1.2 428,624 + Pf6N2E2_362 0.61 +0.2 428,625 - Pf6N2E2_362 0.61 -1.3 428,625 - Pf6N2E2_362 0.61 -0.9 428,625 - Pf6N2E2_362 0.61 -1.0 428,625 - -1.3 428,625 - Pf6N2E2_362 0.61 -0.2 428,664 - Pf6N2E2_362 0.66 -0.6 428,942 - +0.2 428,942 - +1.5 428,957 + +1.5 428,958 - -0.1 428,958 - +0.5 429,237 + Pf6N2E2_363 0.15 -0.1 429,237 + Pf6N2E2_363 0.15 +1.9 429,238 - Pf6N2E2_363 0.15 -1.0 429,238 - Pf6N2E2_363 0.15 -0.0 429,238 - Pf6N2E2_363 0.15 +0.1 429,585 + Pf6N2E2_363 0.34 +1.3 429,585 + Pf6N2E2_363 0.34 -0.4 429,585 + Pf6N2E2_363 0.34 -1.3 429,585 + Pf6N2E2_363 0.34 +0.8 429,586 - Pf6N2E2_363 0.34 +1.4 429,586 - Pf6N2E2_363 0.34 +1.1 429,586 - Pf6N2E2_363 0.34 +1.0 429,586 - Pf6N2E2_363 0.34 +0.0 429,586 - Pf6N2E2_363 0.34 -0.0 429,586 - Pf6N2E2_363 0.34 +0.5
Or see this region's nucleotide sequence