Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1319

Experiment: Ceftazidime 0.15 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1318 and Pf6N2E2_1319 are separated by 182 nucleotidesPf6N2E2_1319 and Pf6N2E2_1320 are separated by 51 nucleotidesPf6N2E2_1320 and Pf6N2E2_1321 are separated by 78 nucleotides Pf6N2E2_1318 - FIG00553873: hypothetical protein, at 1,552,204 to 1,553,502 _1318 Pf6N2E2_1319 - FIG074102: hypothetical protein, at 1,553,685 to 1,554,050 _1319 Pf6N2E2_1320 - Putative response regulator, at 1,554,102 to 1,554,761 _1320 Pf6N2E2_1321 - MoaF protein precursor, at 1,554,840 to 1,555,661 _1321 Position (kb) 1553 1554 1555Strain fitness (log2 ratio) -2 -1 0 1 2at 1552.717 kb on + strand, within Pf6N2E2_1318at 1552.969 kb on + strand, within Pf6N2E2_1318at 1553.041 kb on + strand, within Pf6N2E2_1318at 1553.041 kb on + strand, within Pf6N2E2_1318at 1553.042 kb on - strand, within Pf6N2E2_1318at 1553.042 kb on - strand, within Pf6N2E2_1318at 1553.069 kb on - strand, within Pf6N2E2_1318at 1553.069 kb on - strand, within Pf6N2E2_1318at 1553.519 kb on + strandat 1553.519 kb on + strandat 1553.519 kb on + strandat 1553.519 kb on + strandat 1553.519 kb on + strandat 1553.520 kb on - strandat 1553.520 kb on - strandat 1553.520 kb on - strandat 1553.520 kb on - strandat 1553.520 kb on - strandat 1553.520 kb on - strandat 1553.839 kb on - strand, within Pf6N2E2_1319at 1553.874 kb on + strand, within Pf6N2E2_1319at 1553.874 kb on + strand, within Pf6N2E2_1319at 1553.874 kb on + strand, within Pf6N2E2_1319at 1553.952 kb on + strand, within Pf6N2E2_1319at 1554.033 kb on + strandat 1554.033 kb on + strandat 1554.153 kb on - strandat 1554.187 kb on - strand, within Pf6N2E2_1320at 1554.187 kb on - strand, within Pf6N2E2_1320at 1554.258 kb on + strand, within Pf6N2E2_1320at 1554.258 kb on + strand, within Pf6N2E2_1320at 1554.271 kb on - strand, within Pf6N2E2_1320at 1554.379 kb on - strand, within Pf6N2E2_1320at 1554.716 kb on - strandat 1554.779 kb on - strandat 1554.838 kb on + strandat 1554.839 kb on - strandat 1554.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.15 mg/ml
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1,552,717 + Pf6N2E2_1318 0.39 +0.1
1,552,969 + Pf6N2E2_1318 0.59 +1.1
1,553,041 + Pf6N2E2_1318 0.64 -0.2
1,553,041 + Pf6N2E2_1318 0.64 -0.4
1,553,042 - Pf6N2E2_1318 0.65 -0.5
1,553,042 - Pf6N2E2_1318 0.65 +1.5
1,553,069 - Pf6N2E2_1318 0.67 +0.5
1,553,069 - Pf6N2E2_1318 0.67 -0.4
1,553,519 + -1.1
1,553,519 + -0.5
1,553,519 + -0.5
1,553,519 + -0.5
1,553,519 + +0.3
1,553,520 - -0.5
1,553,520 - +0.0
1,553,520 - +1.4
1,553,520 - -1.1
1,553,520 - +1.6
1,553,520 - -0.0
1,553,839 - Pf6N2E2_1319 0.42 -0.1
1,553,874 + Pf6N2E2_1319 0.52 -0.7
1,553,874 + Pf6N2E2_1319 0.52 -0.5
1,553,874 + Pf6N2E2_1319 0.52 -0.7
1,553,952 + Pf6N2E2_1319 0.73 +0.1
1,554,033 + +0.4
1,554,033 + -0.3
1,554,153 - +0.7
1,554,187 - Pf6N2E2_1320 0.13 -0.5
1,554,187 - Pf6N2E2_1320 0.13 +0.9
1,554,258 + Pf6N2E2_1320 0.24 -0.4
1,554,258 + Pf6N2E2_1320 0.24 +0.6
1,554,271 - Pf6N2E2_1320 0.26 -0.3
1,554,379 - Pf6N2E2_1320 0.42 -0.5
1,554,716 - -0.4
1,554,779 - -0.5
1,554,838 + -2.1
1,554,839 - +0.1
1,554,839 - +1.8

Or see this region's nucleotide sequence