Experiment: Ceftazidime 0.15 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1318 and Pf6N2E2_1319 are separated by 182 nucleotides Pf6N2E2_1319 and Pf6N2E2_1320 are separated by 51 nucleotides Pf6N2E2_1320 and Pf6N2E2_1321 are separated by 78 nucleotides
Pf6N2E2_1318 - FIG00553873: hypothetical protein, at 1,552,204 to 1,553,502
_1318
Pf6N2E2_1319 - FIG074102: hypothetical protein, at 1,553,685 to 1,554,050
_1319
Pf6N2E2_1320 - Putative response regulator, at 1,554,102 to 1,554,761
_1320
Pf6N2E2_1321 - MoaF protein precursor, at 1,554,840 to 1,555,661
_1321
Position (kb)
1553
1554
1555 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1552.717 kb on + strand, within Pf6N2E2_1318 at 1552.969 kb on + strand, within Pf6N2E2_1318 at 1553.041 kb on + strand, within Pf6N2E2_1318 at 1553.041 kb on + strand, within Pf6N2E2_1318 at 1553.042 kb on - strand, within Pf6N2E2_1318 at 1553.042 kb on - strand, within Pf6N2E2_1318 at 1553.069 kb on - strand, within Pf6N2E2_1318 at 1553.069 kb on - strand, within Pf6N2E2_1318 at 1553.519 kb on + strand at 1553.519 kb on + strand at 1553.519 kb on + strand at 1553.519 kb on + strand at 1553.519 kb on + strand at 1553.520 kb on - strand at 1553.520 kb on - strand at 1553.520 kb on - strand at 1553.520 kb on - strand at 1553.520 kb on - strand at 1553.520 kb on - strand at 1553.839 kb on - strand, within Pf6N2E2_1319 at 1553.874 kb on + strand, within Pf6N2E2_1319 at 1553.874 kb on + strand, within Pf6N2E2_1319 at 1553.874 kb on + strand, within Pf6N2E2_1319 at 1553.952 kb on + strand, within Pf6N2E2_1319 at 1554.033 kb on + strand at 1554.033 kb on + strand at 1554.153 kb on - strand at 1554.187 kb on - strand, within Pf6N2E2_1320 at 1554.187 kb on - strand, within Pf6N2E2_1320 at 1554.258 kb on + strand, within Pf6N2E2_1320 at 1554.258 kb on + strand, within Pf6N2E2_1320 at 1554.271 kb on - strand, within Pf6N2E2_1320 at 1554.379 kb on - strand, within Pf6N2E2_1320 at 1554.716 kb on - strand at 1554.779 kb on - strand at 1554.838 kb on + strand at 1554.839 kb on - strand at 1554.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.15 mg/ml remove 1,552,717 + Pf6N2E2_1318 0.39 +0.1 1,552,969 + Pf6N2E2_1318 0.59 +1.1 1,553,041 + Pf6N2E2_1318 0.64 -0.2 1,553,041 + Pf6N2E2_1318 0.64 -0.4 1,553,042 - Pf6N2E2_1318 0.65 -0.5 1,553,042 - Pf6N2E2_1318 0.65 +1.5 1,553,069 - Pf6N2E2_1318 0.67 +0.5 1,553,069 - Pf6N2E2_1318 0.67 -0.4 1,553,519 + -1.1 1,553,519 + -0.5 1,553,519 + -0.5 1,553,519 + -0.5 1,553,519 + +0.3 1,553,520 - -0.5 1,553,520 - +0.0 1,553,520 - +1.4 1,553,520 - -1.1 1,553,520 - +1.6 1,553,520 - -0.0 1,553,839 - Pf6N2E2_1319 0.42 -0.1 1,553,874 + Pf6N2E2_1319 0.52 -0.7 1,553,874 + Pf6N2E2_1319 0.52 -0.5 1,553,874 + Pf6N2E2_1319 0.52 -0.7 1,553,952 + Pf6N2E2_1319 0.73 +0.1 1,554,033 + +0.4 1,554,033 + -0.3 1,554,153 - +0.7 1,554,187 - Pf6N2E2_1320 0.13 -0.5 1,554,187 - Pf6N2E2_1320 0.13 +0.9 1,554,258 + Pf6N2E2_1320 0.24 -0.4 1,554,258 + Pf6N2E2_1320 0.24 +0.6 1,554,271 - Pf6N2E2_1320 0.26 -0.3 1,554,379 - Pf6N2E2_1320 0.42 -0.5 1,554,716 - -0.4 1,554,779 - -0.5 1,554,838 + -2.1 1,554,839 - +0.1 1,554,839 - +1.8
Or see this region's nucleotide sequence