Experiment: Ceftazidime 0.15 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_128 and Pf6N2E2_129 overlap by 11 nucleotides Pf6N2E2_129 and Pf6N2E2_130 are separated by 65 nucleotides Pf6N2E2_130 and Pf6N2E2_131 are separated by 31 nucleotides Pf6N2E2_131 and Pf6N2E2_132 are separated by 219 nucleotides
Pf6N2E2_128 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 177,113 to 179,581
_128
Pf6N2E2_129 - AttH component of AttEFGH ABC transport system, at 179,571 to 180,644
_129
Pf6N2E2_130 - hypothetical protein, at 180,710 to 180,952
_130
Pf6N2E2_131 - hypothetical protein, at 180,984 to 181,157
_131
Pf6N2E2_132 - hcp, at 181,377 to 181,658
_132
Position (kb) 179
180
181 Strain fitness (log2 ratio) -1
0
1
2 at 178.616 kb on + strand, within Pf6N2E2_128 at 178.616 kb on + strand, within Pf6N2E2_128 at 178.617 kb on - strand, within Pf6N2E2_128 at 178.617 kb on - strand, within Pf6N2E2_128 at 178.617 kb on - strand, within Pf6N2E2_128 at 178.946 kb on + strand, within Pf6N2E2_128 at 178.946 kb on + strand, within Pf6N2E2_128 at 178.946 kb on + strand, within Pf6N2E2_128 at 178.946 kb on + strand, within Pf6N2E2_128 at 178.947 kb on - strand, within Pf6N2E2_128 at 179.070 kb on + strand, within Pf6N2E2_128 at 179.531 kb on + strand at 179.532 kb on - strand at 179.579 kb on + strand at 179.579 kb on + strand at 179.580 kb on - strand at 179.704 kb on + strand, within Pf6N2E2_129 at 179.760 kb on + strand, within Pf6N2E2_129 at 179.760 kb on + strand, within Pf6N2E2_129 at 179.761 kb on - strand, within Pf6N2E2_129 at 180.075 kb on + strand, within Pf6N2E2_129 at 180.076 kb on - strand, within Pf6N2E2_129 at 180.076 kb on - strand, within Pf6N2E2_129 at 180.162 kb on + strand, within Pf6N2E2_129 at 180.162 kb on + strand, within Pf6N2E2_129 at 180.162 kb on + strand, within Pf6N2E2_129 at 180.163 kb on - strand, within Pf6N2E2_129 at 180.163 kb on - strand, within Pf6N2E2_129 at 180.163 kb on - strand, within Pf6N2E2_129 at 180.163 kb on - strand, within Pf6N2E2_129 at 180.165 kb on + strand, within Pf6N2E2_129 at 180.166 kb on - strand, within Pf6N2E2_129 at 180.168 kb on + strand, within Pf6N2E2_129 at 180.168 kb on + strand, within Pf6N2E2_129 at 180.168 kb on + strand, within Pf6N2E2_129 at 180.169 kb on - strand, within Pf6N2E2_129 at 180.169 kb on - strand, within Pf6N2E2_129 at 180.372 kb on + strand, within Pf6N2E2_129 at 180.680 kb on + strand at 180.680 kb on + strand at 180.680 kb on + strand at 180.680 kb on + strand at 180.680 kb on + strand at 180.681 kb on - strand at 180.681 kb on - strand at 180.681 kb on - strand at 180.685 kb on + strand at 180.686 kb on - strand at 180.773 kb on + strand, within Pf6N2E2_130 at 181.179 kb on - strand at 181.186 kb on + strand at 181.205 kb on - strand at 181.221 kb on + strand at 181.221 kb on + strand at 181.221 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.224 kb on + strand at 181.225 kb on - strand at 181.225 kb on - strand at 181.225 kb on - strand at 181.225 kb on - strand at 181.255 kb on + strand at 181.256 kb on - strand at 181.312 kb on - strand at 181.321 kb on + strand at 181.321 kb on + strand at 181.428 kb on + strand, within Pf6N2E2_132 at 181.428 kb on + strand, within Pf6N2E2_132 at 181.429 kb on - strand, within Pf6N2E2_132 at 181.429 kb on - strand, within Pf6N2E2_132 at 181.429 kb on - strand, within Pf6N2E2_132 at 181.519 kb on + strand, within Pf6N2E2_132 at 181.519 kb on + strand, within Pf6N2E2_132 at 181.564 kb on + strand, within Pf6N2E2_132 at 181.565 kb on - strand, within Pf6N2E2_132 at 181.565 kb on - strand, within Pf6N2E2_132 at 181.567 kb on + strand, within Pf6N2E2_132 at 181.567 kb on + strand, within Pf6N2E2_132 at 181.567 kb on + strand, within Pf6N2E2_132 at 181.568 kb on - strand, within Pf6N2E2_132 at 181.568 kb on - strand, within Pf6N2E2_132 at 181.568 kb on - strand, within Pf6N2E2_132
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.15 mg/ml remove 178,616 + Pf6N2E2_128 0.61 -0.0 178,616 + Pf6N2E2_128 0.61 +0.0 178,617 - Pf6N2E2_128 0.61 +0.3 178,617 - Pf6N2E2_128 0.61 +1.2 178,617 - Pf6N2E2_128 0.61 -0.3 178,946 + Pf6N2E2_128 0.74 +0.7 178,946 + Pf6N2E2_128 0.74 -0.4 178,946 + Pf6N2E2_128 0.74 -0.0 178,946 + Pf6N2E2_128 0.74 +0.5 178,947 - Pf6N2E2_128 0.74 +0.6 179,070 + Pf6N2E2_128 0.79 +0.3 179,531 + +0.3 179,532 - -0.7 179,579 + +0.1 179,579 + +1.1 179,580 - +0.7 179,704 + Pf6N2E2_129 0.12 +0.9 179,760 + Pf6N2E2_129 0.18 +0.2 179,760 + Pf6N2E2_129 0.18 +1.2 179,761 - Pf6N2E2_129 0.18 -1.0 180,075 + Pf6N2E2_129 0.47 -0.4 180,076 - Pf6N2E2_129 0.47 -0.2 180,076 - Pf6N2E2_129 0.47 +0.1 180,162 + Pf6N2E2_129 0.55 -0.9 180,162 + Pf6N2E2_129 0.55 -0.7 180,162 + Pf6N2E2_129 0.55 -1.5 180,163 - Pf6N2E2_129 0.55 +1.8 180,163 - Pf6N2E2_129 0.55 +0.3 180,163 - Pf6N2E2_129 0.55 +0.3 180,163 - Pf6N2E2_129 0.55 +0.1 180,165 + Pf6N2E2_129 0.55 +0.7 180,166 - Pf6N2E2_129 0.55 -1.4 180,168 + Pf6N2E2_129 0.56 -1.6 180,168 + Pf6N2E2_129 0.56 -0.8 180,168 + Pf6N2E2_129 0.56 -0.9 180,169 - Pf6N2E2_129 0.56 +0.5 180,169 - Pf6N2E2_129 0.56 -1.1 180,372 + Pf6N2E2_129 0.75 +0.2 180,680 + +0.5 180,680 + +0.0 180,680 + +0.3 180,680 + -0.3 180,680 + -0.5 180,681 - +0.3 180,681 - -0.0 180,681 - -0.3 180,685 + -1.0 180,686 - +0.2 180,773 + Pf6N2E2_130 0.26 +0.7 181,179 - +1.0 181,186 + +0.0 181,205 - +0.2 181,221 + +0.3 181,221 + -0.4 181,221 + +1.6 181,224 + -0.8 181,224 + +0.2 181,224 + +1.2 181,224 + +1.0 181,224 + +1.6 181,224 + +0.1 181,224 + +0.6 181,224 + +0.2 181,225 - +1.7 181,225 - -0.6 181,225 - -1.6 181,225 - +1.1 181,255 + +0.3 181,256 - -0.3 181,312 - +1.5 181,321 + +2.1 181,321 + +0.4 181,428 + Pf6N2E2_132 0.18 +1.0 181,428 + Pf6N2E2_132 0.18 +0.5 181,429 - Pf6N2E2_132 0.18 +1.5 181,429 - Pf6N2E2_132 0.18 +2.0 181,429 - Pf6N2E2_132 0.18 -0.4 181,519 + Pf6N2E2_132 0.50 +0.7 181,519 + Pf6N2E2_132 0.50 +0.8 181,564 + Pf6N2E2_132 0.66 +1.6 181,565 - Pf6N2E2_132 0.67 +0.5 181,565 - Pf6N2E2_132 0.67 +0.1 181,567 + Pf6N2E2_132 0.67 +1.5 181,567 + Pf6N2E2_132 0.67 -0.5 181,567 + Pf6N2E2_132 0.67 +1.3 181,568 - Pf6N2E2_132 0.68 +1.6 181,568 - Pf6N2E2_132 0.68 +1.1 181,568 - Pf6N2E2_132 0.68 +0.3
Or see this region's nucleotide sequence