Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03925

Experiment: formate McAA B12 dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03920 and MMJJ_RS03925 are separated by 256 nucleotidesMMJJ_RS03925 and MMJJ_RS03930 are separated by 13 nucleotidesMMJJ_RS03930 and MMJJ_RS03935 are separated by 19 nucleotides MMJJ_RS03920: MMJJ_RS03920 - nickel pincer cofactor biosynthesis protein LarC, at 731,783 to 732,997 _RS03920 MMJJ_RS03925: MMJJ_RS03925 - tRNA pseudouridine(38-40) synthase TruA, at 733,254 to 734,042 _RS03925 MMJJ_RS03930: MMJJ_RS03930 - hypothetical protein, at 734,056 to 734,772 _RS03930 MMJJ_RS03935: MMJJ_RS03935 - NAAT family transporter, at 734,792 to 735,433 _RS03935 Position (kb) 733 734 735Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 732.276 kb on + strand, within MMJJ_RS03920at 732.338 kb on - strand, within MMJJ_RS03920at 732.383 kb on - strand, within MMJJ_RS03920at 732.384 kb on + strand, within MMJJ_RS03920at 732.384 kb on + strand, within MMJJ_RS03920at 732.425 kb on - strand, within MMJJ_RS03920at 732.425 kb on - strand, within MMJJ_RS03920at 732.426 kb on + strand, within MMJJ_RS03920at 732.426 kb on + strand, within MMJJ_RS03920at 732.451 kb on - strand, within MMJJ_RS03920at 732.506 kb on + strand, within MMJJ_RS03920at 732.596 kb on - strand, within MMJJ_RS03920at 732.596 kb on - strand, within MMJJ_RS03920at 732.596 kb on - strand, within MMJJ_RS03920at 732.597 kb on + strand, within MMJJ_RS03920at 732.597 kb on + strand, within MMJJ_RS03920at 732.614 kb on - strand, within MMJJ_RS03920at 732.614 kb on - strand, within MMJJ_RS03920at 732.614 kb on - strand, within MMJJ_RS03920at 732.614 kb on - strand, within MMJJ_RS03920at 732.683 kb on - strand, within MMJJ_RS03920at 732.723 kb on + strand, within MMJJ_RS03920at 732.736 kb on - strand, within MMJJ_RS03920at 732.736 kb on - strand, within MMJJ_RS03920at 732.736 kb on - strand, within MMJJ_RS03920at 732.736 kb on - strand, within MMJJ_RS03920at 732.737 kb on + strand, within MMJJ_RS03920at 732.737 kb on + strand, within MMJJ_RS03920at 732.737 kb on + strand, within MMJJ_RS03920at 732.737 kb on + strand, within MMJJ_RS03920at 732.741 kb on + strand, within MMJJ_RS03920at 732.746 kb on + strand, within MMJJ_RS03920at 732.756 kb on + strand, within MMJJ_RS03920at 732.850 kb on - strand, within MMJJ_RS03920at 732.850 kb on - strand, within MMJJ_RS03920at 732.946 kb on - strandat 732.947 kb on + strandat 733.001 kb on + strandat 733.020 kb on + strandat 733.029 kb on - strandat 733.029 kb on - strandat 733.029 kb on - strandat 733.030 kb on + strandat 733.035 kb on - strandat 733.035 kb on - strandat 733.035 kb on - strandat 733.036 kb on + strandat 733.052 kb on + strandat 733.096 kb on + strandat 733.104 kb on - strandat 733.104 kb on - strandat 733.105 kb on + strandat 733.105 kb on + strandat 733.130 kb on - strandat 733.143 kb on + strandat 733.149 kb on + strandat 733.176 kb on + strandat 733.183 kb on - strandat 733.184 kb on + strandat 733.184 kb on + strandat 733.188 kb on - strandat 733.188 kb on - strandat 733.188 kb on - strandat 733.189 kb on + strandat 733.189 kb on + strandat 733.190 kb on - strandat 733.190 kb on - strandat 733.191 kb on + strandat 733.191 kb on + strandat 733.192 kb on - strandat 733.193 kb on + strandat 733.193 kb on + strandat 733.193 kb on + strandat 733.193 kb on + strandat 733.193 kb on + strandat 733.193 kb on + strandat 733.193 kb on + strandat 733.193 kb on + strandat 733.193 kb on + strandat 733.193 kb on + strandat 733.194 kb on - strandat 733.194 kb on - strandat 733.194 kb on - strandat 733.194 kb on - strandat 733.194 kb on - strandat 733.194 kb on - strandat 733.194 kb on - strandat 733.194 kb on - strandat 733.195 kb on + strandat 733.195 kb on + strandat 733.195 kb on + strandat 733.195 kb on + strandat 733.195 kb on + strandat 733.195 kb on + strandat 733.200 kb on - strandat 733.206 kb on + strandat 733.239 kb on - strandat 733.242 kb on + strandat 733.251 kb on + strandat 733.251 kb on + strandat 733.253 kb on - strandat 733.253 kb on - strandat 733.253 kb on - strandat 733.253 kb on - strandat 733.253 kb on - strandat 733.254 kb on + strandat 733.254 kb on + strandat 733.254 kb on + strandat 733.254 kb on + strandat 733.254 kb on + strandat 733.254 kb on + strandat 733.254 kb on + strandat 733.254 kb on + strandat 733.254 kb on + strandat 733.257 kb on - strandat 733.257 kb on - strandat 733.257 kb on - strandat 733.257 kb on - strandat 733.257 kb on - strandat 733.257 kb on - strandat 733.257 kb on - strandat 733.258 kb on + strandat 733.261 kb on - strandat 733.261 kb on - strandat 733.261 kb on - strandat 733.262 kb on + strandat 733.262 kb on + strandat 733.262 kb on + strandat 733.276 kb on + strandat 733.276 kb on + strandat 733.364 kb on + strand, within MMJJ_RS03925at 733.364 kb on + strand, within MMJJ_RS03925at 733.364 kb on + strand, within MMJJ_RS03925at 733.377 kb on + strand, within MMJJ_RS03925at 733.389 kb on - strand, within MMJJ_RS03925at 733.389 kb on - strand, within MMJJ_RS03925at 733.390 kb on + strand, within MMJJ_RS03925at 733.390 kb on + strand, within MMJJ_RS03925at 733.418 kb on + strand, within MMJJ_RS03925at 733.438 kb on - strand, within MMJJ_RS03925at 733.438 kb on - strand, within MMJJ_RS03925at 733.438 kb on - strand, within MMJJ_RS03925at 733.439 kb on + strand, within MMJJ_RS03925at 733.439 kb on + strand, within MMJJ_RS03925at 733.439 kb on + strand, within MMJJ_RS03925at 733.443 kb on - strand, within MMJJ_RS03925at 733.444 kb on + strand, within MMJJ_RS03925at 733.444 kb on + strand, within MMJJ_RS03925at 733.490 kb on - strand, within MMJJ_RS03925at 733.490 kb on - strand, within MMJJ_RS03925at 733.551 kb on - strand, within MMJJ_RS03925at 733.566 kb on - strand, within MMJJ_RS03925at 733.568 kb on - strand, within MMJJ_RS03925at 733.568 kb on - strand, within MMJJ_RS03925at 733.569 kb on + strand, within MMJJ_RS03925at 733.601 kb on + strand, within MMJJ_RS03925at 733.601 kb on + strand, within MMJJ_RS03925at 733.638 kb on - strand, within MMJJ_RS03925at 733.639 kb on + strand, within MMJJ_RS03925at 733.675 kb on - strandat 733.744 kb on - strand, within MMJJ_RS03925at 733.744 kb on - strand, within MMJJ_RS03925at 733.745 kb on + strand, within MMJJ_RS03925at 733.745 kb on + strand, within MMJJ_RS03925at 733.775 kb on - strand, within MMJJ_RS03925at 733.776 kb on + strand, within MMJJ_RS03925at 733.784 kb on - strand, within MMJJ_RS03925at 733.786 kb on - strand, within MMJJ_RS03925at 733.786 kb on - strand, within MMJJ_RS03925at 733.847 kb on + strand, within MMJJ_RS03925at 733.847 kb on + strand, within MMJJ_RS03925at 733.847 kb on + strand, within MMJJ_RS03925at 733.903 kb on - strand, within MMJJ_RS03925at 733.903 kb on - strand, within MMJJ_RS03925at 733.903 kb on - strand, within MMJJ_RS03925at 733.944 kb on + strand, within MMJJ_RS03925at 733.947 kb on - strand, within MMJJ_RS03925at 733.947 kb on - strand, within MMJJ_RS03925at 733.948 kb on + strand, within MMJJ_RS03925at 733.948 kb on + strand, within MMJJ_RS03925at 733.948 kb on + strand, within MMJJ_RS03925at 734.052 kb on - strandat 734.062 kb on - strandat 734.062 kb on - strandat 734.062 kb on - strandat 734.062 kb on - strandat 734.062 kb on - strandat 734.062 kb on - strandat 734.062 kb on - strandat 734.063 kb on + strandat 734.063 kb on + strandat 734.063 kb on + strandat 734.063 kb on + strandat 734.063 kb on + strandat 734.076 kb on + strandat 734.076 kb on + strandat 734.087 kb on - strandat 734.088 kb on + strandat 734.088 kb on + strandat 734.109 kb on - strandat 734.150 kb on - strand, within MMJJ_RS03930at 734.171 kb on - strand, within MMJJ_RS03930at 734.185 kb on + strand, within MMJJ_RS03930at 734.185 kb on + strand, within MMJJ_RS03930at 734.185 kb on + strand, within MMJJ_RS03930at 734.211 kb on + strand, within MMJJ_RS03930at 734.270 kb on - strand, within MMJJ_RS03930at 734.275 kb on - strand, within MMJJ_RS03930at 734.316 kb on - strand, within MMJJ_RS03930at 734.317 kb on + strand, within MMJJ_RS03930at 734.350 kb on - strand, within MMJJ_RS03930at 734.351 kb on + strand, within MMJJ_RS03930at 734.406 kb on - strand, within MMJJ_RS03930at 734.410 kb on - strand, within MMJJ_RS03930at 734.410 kb on - strand, within MMJJ_RS03930at 734.411 kb on + strand, within MMJJ_RS03930at 734.411 kb on + strand, within MMJJ_RS03930at 734.411 kb on + strand, within MMJJ_RS03930at 734.444 kb on - strand, within MMJJ_RS03930at 734.444 kb on - strand, within MMJJ_RS03930at 734.444 kb on - strand, within MMJJ_RS03930at 734.444 kb on - strand, within MMJJ_RS03930at 734.476 kb on - strand, within MMJJ_RS03930at 734.544 kb on - strand, within MMJJ_RS03930at 734.545 kb on + strand, within MMJJ_RS03930at 734.644 kb on - strand, within MMJJ_RS03930at 734.645 kb on + strand, within MMJJ_RS03930at 734.673 kb on - strand, within MMJJ_RS03930at 734.673 kb on - strand, within MMJJ_RS03930at 734.673 kb on - strand, within MMJJ_RS03930at 734.674 kb on + strand, within MMJJ_RS03930at 734.675 kb on - strand, within MMJJ_RS03930at 734.675 kb on - strand, within MMJJ_RS03930at 734.676 kb on + strand, within MMJJ_RS03930at 734.696 kb on + strand, within MMJJ_RS03930at 734.697 kb on - strand, within MMJJ_RS03930at 734.770 kb on - strandat 734.770 kb on - strandat 734.771 kb on + strandat 734.771 kb on + strandat 734.791 kb on - strandat 734.800 kb on + strandat 734.807 kb on + strandat 734.868 kb on + strand, within MMJJ_RS03935at 734.871 kb on - strand, within MMJJ_RS03935at 734.871 kb on - strand, within MMJJ_RS03935at 734.872 kb on + strand, within MMJJ_RS03935at 734.881 kb on - strand, within MMJJ_RS03935at 734.888 kb on - strand, within MMJJ_RS03935at 734.920 kb on - strand, within MMJJ_RS03935at 734.920 kb on - strand, within MMJJ_RS03935at 734.921 kb on + strand, within MMJJ_RS03935at 734.926 kb on - strand, within MMJJ_RS03935at 734.927 kb on + strand, within MMJJ_RS03935at 734.949 kb on - strand, within MMJJ_RS03935at 734.949 kb on - strand, within MMJJ_RS03935at 734.950 kb on + strand, within MMJJ_RS03935at 734.950 kb on + strand, within MMJJ_RS03935at 734.950 kb on + strand, within MMJJ_RS03935at 735.037 kb on + strand, within MMJJ_RS03935at 735.037 kb on + strand, within MMJJ_RS03935

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA B12 dropout
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732,276 + MMJJ_RS03920 0.41 -1.1
732,338 - MMJJ_RS03920 0.46 -1.7
732,383 - MMJJ_RS03920 0.49 -0.2
732,384 + MMJJ_RS03920 0.49 -3.1
732,384 + MMJJ_RS03920 0.49 -0.5
732,425 - MMJJ_RS03920 0.53 -1.8
732,425 - MMJJ_RS03920 0.53 -0.3
732,426 + MMJJ_RS03920 0.53 -1.4
732,426 + MMJJ_RS03920 0.53 -1.0
732,451 - MMJJ_RS03920 0.55 -0.2
732,506 + MMJJ_RS03920 0.60 -2.0
732,596 - MMJJ_RS03920 0.67 -0.9
732,596 - MMJJ_RS03920 0.67 -1.9
732,596 - MMJJ_RS03920 0.67 -0.8
732,597 + MMJJ_RS03920 0.67 -0.8
732,597 + MMJJ_RS03920 0.67 -1.6
732,614 - MMJJ_RS03920 0.68 -0.8
732,614 - MMJJ_RS03920 0.68 -2.9
732,614 - MMJJ_RS03920 0.68 -0.8
732,614 - MMJJ_RS03920 0.68 -1.6
732,683 - MMJJ_RS03920 0.74 -0.4
732,723 + MMJJ_RS03920 0.77 -1.0
732,736 - MMJJ_RS03920 0.78 -2.0
732,736 - MMJJ_RS03920 0.78 -0.5
732,736 - MMJJ_RS03920 0.78 -3.1
732,736 - MMJJ_RS03920 0.78 -0.5
732,737 + MMJJ_RS03920 0.79 -0.4
732,737 + MMJJ_RS03920 0.79 -1.1
732,737 + MMJJ_RS03920 0.79 -0.8
732,737 + MMJJ_RS03920 0.79 -0.4
732,741 + MMJJ_RS03920 0.79 +0.1
732,746 + MMJJ_RS03920 0.79 -2.0
732,756 + MMJJ_RS03920 0.80 -1.7
732,850 - MMJJ_RS03920 0.88 -1.0
732,850 - MMJJ_RS03920 0.88 -2.6
732,946 - -1.0
732,947 + -1.2
733,001 + -2.3
733,020 + +0.8
733,029 - +0.3
733,029 - -0.5
733,029 - +0.6
733,030 + -0.3
733,035 - +0.2
733,035 - -0.0
733,035 - +0.6
733,036 + -0.0
733,052 + +1.4
733,096 + -0.3
733,104 - +0.4
733,104 - -0.6
733,105 + +0.1
733,105 + -0.4
733,130 - -0.0
733,143 + +1.0
733,149 + -0.9
733,176 + +0.4
733,183 - -0.4
733,184 + -0.2
733,184 + +0.4
733,188 - -0.5
733,188 - -0.5
733,188 - +0.7
733,189 + -0.9
733,189 + +0.0
733,190 - +0.8
733,190 - +0.2
733,191 + -0.8
733,191 + +1.0
733,192 - +0.8
733,193 + -2.5
733,193 + -1.2
733,193 + +0.7
733,193 + -0.4
733,193 + +0.0
733,193 + +0.2
733,193 + -0.5
733,193 + -1.3
733,193 + +0.6
733,193 + +0.4
733,194 - -0.1
733,194 - +1.0
733,194 - -1.1
733,194 - +0.2
733,194 - -0.3
733,194 - -2.1
733,194 - -0.8
733,194 - -0.0
733,195 + -1.5
733,195 + -0.2
733,195 + -1.3
733,195 + -1.5
733,195 + +0.6
733,195 + -0.7
733,200 - -0.8
733,206 + -0.5
733,239 - +0.3
733,242 + -0.9
733,251 + -0.6
733,251 + -1.1
733,253 - +0.0
733,253 - -2.1
733,253 - -0.3
733,253 - -0.5
733,253 - -0.1
733,254 + +0.5
733,254 + -1.3
733,254 + -1.0
733,254 + -3.6
733,254 + -0.1
733,254 + -0.5
733,254 + +0.3
733,254 + +0.3
733,254 + -0.0
733,257 - -0.5
733,257 - -0.5
733,257 - +0.6
733,257 - -1.5
733,257 - -0.2
733,257 - -0.3
733,257 - +0.3
733,258 + +0.5
733,261 - -1.8
733,261 - -0.5
733,261 - -0.8
733,262 + -0.7
733,262 + -0.5
733,262 + -0.5
733,276 + -1.2
733,276 + -0.2
733,364 + MMJJ_RS03925 0.14 -0.8
733,364 + MMJJ_RS03925 0.14 +0.3
733,364 + MMJJ_RS03925 0.14 -0.1
733,377 + MMJJ_RS03925 0.16 +0.1
733,389 - MMJJ_RS03925 0.17 +0.1
733,389 - MMJJ_RS03925 0.17 -1.8
733,390 + MMJJ_RS03925 0.17 -1.1
733,390 + MMJJ_RS03925 0.17 -1.0
733,418 + MMJJ_RS03925 0.21 -1.5
733,438 - MMJJ_RS03925 0.23 -0.0
733,438 - MMJJ_RS03925 0.23 +1.2
733,438 - MMJJ_RS03925 0.23 -0.9
733,439 + MMJJ_RS03925 0.23 +0.0
733,439 + MMJJ_RS03925 0.23 -0.9
733,439 + MMJJ_RS03925 0.23 -0.3
733,443 - MMJJ_RS03925 0.24 -0.2
733,444 + MMJJ_RS03925 0.24 +0.3
733,444 + MMJJ_RS03925 0.24 -0.1
733,490 - MMJJ_RS03925 0.30 -0.7
733,490 - MMJJ_RS03925 0.30 -0.3
733,551 - MMJJ_RS03925 0.38 -1.5
733,566 - MMJJ_RS03925 0.40 +0.2
733,568 - MMJJ_RS03925 0.40 -1.5
733,568 - MMJJ_RS03925 0.40 -1.8
733,569 + MMJJ_RS03925 0.40 -0.0
733,601 + MMJJ_RS03925 0.44 -0.9
733,601 + MMJJ_RS03925 0.44 +0.3
733,638 - MMJJ_RS03925 0.49 -2.9
733,639 + MMJJ_RS03925 0.49 +0.2
733,675 - -2.0
733,744 - MMJJ_RS03925 0.62 -0.7
733,744 - MMJJ_RS03925 0.62 +1.4
733,745 + MMJJ_RS03925 0.62 -0.1
733,745 + MMJJ_RS03925 0.62 +0.3
733,775 - MMJJ_RS03925 0.66 -0.8
733,776 + MMJJ_RS03925 0.66 -1.0
733,784 - MMJJ_RS03925 0.67 +0.6
733,786 - MMJJ_RS03925 0.67 -0.5
733,786 - MMJJ_RS03925 0.67 -0.3
733,847 + MMJJ_RS03925 0.75 -0.3
733,847 + MMJJ_RS03925 0.75 +0.1
733,847 + MMJJ_RS03925 0.75 +0.4
733,903 - MMJJ_RS03925 0.82 -0.4
733,903 - MMJJ_RS03925 0.82 -0.3
733,903 - MMJJ_RS03925 0.82 -0.1
733,944 + MMJJ_RS03925 0.87 -0.9
733,947 - MMJJ_RS03925 0.88 -0.4
733,947 - MMJJ_RS03925 0.88 -0.8
733,948 + MMJJ_RS03925 0.88 +0.2
733,948 + MMJJ_RS03925 0.88 +1.0
733,948 + MMJJ_RS03925 0.88 -1.3
734,052 - -0.9
734,062 - -0.8
734,062 - -3.4
734,062 - -3.0
734,062 - +0.8
734,062 - -1.9
734,062 - -1.8
734,062 - -1.3
734,063 + -1.0
734,063 + -0.4
734,063 + +0.1
734,063 + -1.4
734,063 + -0.8
734,076 + -0.1
734,076 + -1.6
734,087 - -0.4
734,088 + -1.3
734,088 + -0.5
734,109 - -2.1
734,150 - MMJJ_RS03930 0.13 -1.0
734,171 - MMJJ_RS03930 0.16 -1.9
734,185 + MMJJ_RS03930 0.18 -2.2
734,185 + MMJJ_RS03930 0.18 -1.3
734,185 + MMJJ_RS03930 0.18 -1.8
734,211 + MMJJ_RS03930 0.22 -0.6
734,270 - MMJJ_RS03930 0.30 -1.2
734,275 - MMJJ_RS03930 0.31 -2.4
734,316 - MMJJ_RS03930 0.36 -2.0
734,317 + MMJJ_RS03930 0.36 -1.2
734,350 - MMJJ_RS03930 0.41 -0.5
734,351 + MMJJ_RS03930 0.41 -1.0
734,406 - MMJJ_RS03930 0.49 -0.7
734,410 - MMJJ_RS03930 0.49 -0.0
734,410 - MMJJ_RS03930 0.49 +1.4
734,411 + MMJJ_RS03930 0.50 -2.0
734,411 + MMJJ_RS03930 0.50 -3.5
734,411 + MMJJ_RS03930 0.50 -0.2
734,444 - MMJJ_RS03930 0.54 -2.3
734,444 - MMJJ_RS03930 0.54 -0.9
734,444 - MMJJ_RS03930 0.54 -1.2
734,444 - MMJJ_RS03930 0.54 -0.2
734,476 - MMJJ_RS03930 0.59 -2.0
734,544 - MMJJ_RS03930 0.68 -1.0
734,545 + MMJJ_RS03930 0.68 -1.4
734,644 - MMJJ_RS03930 0.82 -1.0
734,645 + MMJJ_RS03930 0.82 +0.8
734,673 - MMJJ_RS03930 0.86 -1.5
734,673 - MMJJ_RS03930 0.86 -0.9
734,673 - MMJJ_RS03930 0.86 -0.8
734,674 + MMJJ_RS03930 0.86 -1.8
734,675 - MMJJ_RS03930 0.86 -1.1
734,675 - MMJJ_RS03930 0.86 -4.5
734,676 + MMJJ_RS03930 0.86 -1.5
734,696 + MMJJ_RS03930 0.89 -0.9
734,697 - MMJJ_RS03930 0.89 -2.3
734,770 - +1.0
734,770 - -2.6
734,771 + -0.2
734,771 + +0.9
734,791 - -1.6
734,800 + -0.9
734,807 + -0.5
734,868 + MMJJ_RS03935 0.12 -0.7
734,871 - MMJJ_RS03935 0.12 -0.6
734,871 - MMJJ_RS03935 0.12 -1.1
734,872 + MMJJ_RS03935 0.12 +0.6
734,881 - MMJJ_RS03935 0.14 +0.5
734,888 - MMJJ_RS03935 0.15 +1.0
734,920 - MMJJ_RS03935 0.20 +0.4
734,920 - MMJJ_RS03935 0.20 -0.5
734,921 + MMJJ_RS03935 0.20 -0.4
734,926 - MMJJ_RS03935 0.21 +0.1
734,927 + MMJJ_RS03935 0.21 +1.6
734,949 - MMJJ_RS03935 0.24 +1.9
734,949 - MMJJ_RS03935 0.24 -0.8
734,950 + MMJJ_RS03935 0.25 +0.1
734,950 + MMJJ_RS03935 0.25 -0.2
734,950 + MMJJ_RS03935 0.25 -0.1
735,037 + MMJJ_RS03935 0.38 -1.2
735,037 + MMJJ_RS03935 0.38 +0.1

Or see this region's nucleotide sequence