Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06392 and H281DRAFT_06393 overlap by 4 nucleotides H281DRAFT_06393 and H281DRAFT_06394 are separated by 32 nucleotides H281DRAFT_06394 and H281DRAFT_06395 overlap by 4 nucleotides
H281DRAFT_06392: H281DRAFT_06392 - Microcystin degradation protein MlrC, contains DUF1485 domain, at 62,788 to 64,287
_06392
H281DRAFT_06393: H281DRAFT_06393 - N-carbamoyl-L-amino-acid hydrolase, at 64,284 to 65,582
_06393
H281DRAFT_06394: H281DRAFT_06394 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 65,615 to 66,316
_06394
H281DRAFT_06395: H281DRAFT_06395 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 66,313 to 67,080
_06395
Position (kb) 64
65
66 Strain fitness (log2 ratio) -1
0
1 at 63.559 kb on - strand, within H281DRAFT_06392 at 63.745 kb on + strand, within H281DRAFT_06392 at 63.745 kb on + strand, within H281DRAFT_06392 at 63.789 kb on - strand, within H281DRAFT_06392 at 63.792 kb on + strand, within H281DRAFT_06392 at 63.792 kb on + strand at 63.792 kb on + strand, within H281DRAFT_06392 at 63.793 kb on - strand, within H281DRAFT_06392 at 63.807 kb on - strand, within H281DRAFT_06392 at 63.980 kb on - strand, within H281DRAFT_06392 at 64.288 kb on - strand at 64.469 kb on - strand, within H281DRAFT_06393 at 64.761 kb on + strand, within H281DRAFT_06393 at 65.035 kb on + strand, within H281DRAFT_06393 at 65.208 kb on - strand, within H281DRAFT_06393 at 65.715 kb on + strand, within H281DRAFT_06394
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 63,559 - H281DRAFT_06392 0.51 +1.6 63,745 + H281DRAFT_06392 0.64 +0.3 63,745 + H281DRAFT_06392 0.64 +0.2 63,789 - H281DRAFT_06392 0.67 +0.3 63,792 + H281DRAFT_06392 0.67 +0.5 63,792 + -0.1 63,792 + H281DRAFT_06392 0.67 -0.5 63,793 - H281DRAFT_06392 0.67 +0.9 63,807 - H281DRAFT_06392 0.68 -1.5 63,980 - H281DRAFT_06392 0.79 -0.9 64,288 - +1.6 64,469 - H281DRAFT_06393 0.14 +0.9 64,761 + H281DRAFT_06393 0.37 +0.6 65,035 + H281DRAFT_06393 0.58 -0.9 65,208 - H281DRAFT_06393 0.71 +1.7 65,715 + H281DRAFT_06394 0.14 +0.2
Or see this region's nucleotide sequence