Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05411 and H281DRAFT_05412 are separated by 452 nucleotides H281DRAFT_05412 and H281DRAFT_05413 are separated by 264 nucleotides
H281DRAFT_05411: H281DRAFT_05411 - Predicted periplasmic or secreted lipoprotein, at 175,380 to 175,745
_05411
H281DRAFT_05412: H281DRAFT_05412 - DNA-3-methyladenine glycosylase, at 176,198 to 176,845
_05412
H281DRAFT_05413: H281DRAFT_05413 - protein of unknown function (DUF4148), at 177,110 to 177,454
_05413
Position (kb) 176
177 Strain fitness (log2 ratio) -2
-1
0
1
2 at 175.269 kb on - strand at 175.290 kb on - strand at 175.769 kb on - strand at 175.769 kb on - strand at 175.804 kb on - strand at 176.099 kb on + strand at 176.100 kb on - strand at 176.110 kb on + strand at 176.110 kb on + strand at 176.317 kb on + strand, within H281DRAFT_05412 at 176.318 kb on - strand, within H281DRAFT_05412 at 176.349 kb on - strand, within H281DRAFT_05412 at 176.396 kb on + strand, within H281DRAFT_05412 at 176.432 kb on + strand, within H281DRAFT_05412 at 176.433 kb on - strand, within H281DRAFT_05412 at 176.448 kb on - strand, within H281DRAFT_05412 at 176.448 kb on - strand, within H281DRAFT_05412 at 176.454 kb on + strand, within H281DRAFT_05412 at 176.459 kb on + strand, within H281DRAFT_05412 at 176.460 kb on - strand at 176.460 kb on - strand, within H281DRAFT_05412 at 176.470 kb on + strand, within H281DRAFT_05412 at 176.471 kb on - strand, within H281DRAFT_05412 at 176.609 kb on - strand, within H281DRAFT_05412 at 176.609 kb on - strand, within H281DRAFT_05412 at 176.609 kb on - strand, within H281DRAFT_05412 at 176.873 kb on + strand at 176.873 kb on + strand at 176.878 kb on - strand at 176.878 kb on - strand at 176.926 kb on + strand at 176.927 kb on - strand at 176.996 kb on + strand at 176.996 kb on + strand at 176.997 kb on - strand at 176.997 kb on - strand at 176.997 kb on - strand at 176.997 kb on - strand at 177.001 kb on - strand at 177.001 kb on - strand at 177.001 kb on - strand at 177.040 kb on + strand at 177.040 kb on + strand at 177.102 kb on + strand at 177.102 kb on + strand at 177.105 kb on + strand at 177.106 kb on - strand at 177.106 kb on - strand at 177.106 kb on - strand at 177.121 kb on + strand at 177.245 kb on + strand, within H281DRAFT_05413 at 177.246 kb on - strand, within H281DRAFT_05413 at 177.276 kb on - strand, within H281DRAFT_05413 at 177.419 kb on - strand, within H281DRAFT_05413 at 177.419 kb on - strand, within H281DRAFT_05413 at 177.419 kb on - strand, within H281DRAFT_05413 at 177.419 kb on - strand, within H281DRAFT_05413 at 177.440 kb on + strand at 177.453 kb on - strand at 177.453 kb on - strand at 177.453 kb on - strand at 177.522 kb on - strand at 177.611 kb on - strand at 177.769 kb on + strand at 177.770 kb on - strand at 177.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 175,269 - +0.1 175,290 - +0.4 175,769 - -0.5 175,769 - -0.6 175,804 - +0.6 176,099 + -0.6 176,100 - +0.6 176,110 + -0.3 176,110 + +0.0 176,317 + H281DRAFT_05412 0.18 -0.2 176,318 - H281DRAFT_05412 0.19 -0.2 176,349 - H281DRAFT_05412 0.23 +0.7 176,396 + H281DRAFT_05412 0.31 -0.3 176,432 + H281DRAFT_05412 0.36 +0.9 176,433 - H281DRAFT_05412 0.36 +0.3 176,448 - H281DRAFT_05412 0.39 +1.1 176,448 - H281DRAFT_05412 0.39 +0.8 176,454 + H281DRAFT_05412 0.40 +0.1 176,459 + H281DRAFT_05412 0.40 +0.3 176,460 - +1.8 176,460 - H281DRAFT_05412 0.40 +0.3 176,470 + H281DRAFT_05412 0.42 +0.0 176,471 - H281DRAFT_05412 0.42 +0.2 176,609 - H281DRAFT_05412 0.63 -0.8 176,609 - H281DRAFT_05412 0.63 +0.7 176,609 - H281DRAFT_05412 0.63 +0.8 176,873 + -0.2 176,873 + +0.3 176,878 - -0.1 176,878 - +0.5 176,926 + -1.0 176,927 - -1.7 176,996 + -1.8 176,996 + +0.0 176,997 - +1.3 176,997 - +0.5 176,997 - +0.3 176,997 - -1.3 177,001 - -0.0 177,001 - -0.3 177,001 - -0.2 177,040 + +0.1 177,040 + +0.7 177,102 + +0.1 177,102 + +1.1 177,105 + -0.4 177,106 - -0.4 177,106 - -0.2 177,106 - -0.7 177,121 + +1.6 177,245 + H281DRAFT_05413 0.39 -0.2 177,246 - H281DRAFT_05413 0.39 +0.9 177,276 - H281DRAFT_05413 0.48 -0.8 177,419 - H281DRAFT_05413 0.90 -0.2 177,419 - H281DRAFT_05413 0.90 +0.2 177,419 - H281DRAFT_05413 0.90 -1.4 177,419 - H281DRAFT_05413 0.90 +1.0 177,440 + -0.5 177,453 - +2.4 177,453 - +0.1 177,453 - +0.1 177,522 - +0.3 177,611 - +0.9 177,769 + -1.0 177,770 - -0.2 177,809 + -0.0
Or see this region's nucleotide sequence