Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05392 and H281DRAFT_05393 are separated by 474 nucleotides H281DRAFT_05393 and H281DRAFT_05394 are separated by 119 nucleotides H281DRAFT_05394 and H281DRAFT_05395 are separated by 300 nucleotides
H281DRAFT_05392: H281DRAFT_05392 - hypothetical protein, at 154,590 to 155,699
_05392
H281DRAFT_05393: H281DRAFT_05393 - Outer membrane protein (porin), at 156,174 to 157,334
_05393
H281DRAFT_05394: H281DRAFT_05394 - hypothetical protein, at 157,454 to 157,753
_05394
H281DRAFT_05395: H281DRAFT_05395 - Protein of unknown function (DUF3465), at 158,054 to 158,470
_05395
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.261 kb on - strand, within H281DRAFT_05392 at 155.261 kb on - strand, within H281DRAFT_05392 at 155.284 kb on + strand, within H281DRAFT_05392 at 155.285 kb on - strand, within H281DRAFT_05392 at 155.581 kb on + strand, within H281DRAFT_05392 at 155.582 kb on - strand at 155.706 kb on + strand at 155.707 kb on - strand at 155.853 kb on + strand at 155.912 kb on - strand at 155.912 kb on - strand at 155.985 kb on + strand at 156.027 kb on - strand at 156.058 kb on - strand at 156.097 kb on - strand at 156.097 kb on - strand at 156.112 kb on + strand at 156.113 kb on - strand at 156.113 kb on - strand at 156.265 kb on - strand at 156.265 kb on - strand at 156.322 kb on - strand, within H281DRAFT_05393 at 156.461 kb on + strand, within H281DRAFT_05393 at 156.461 kb on + strand, within H281DRAFT_05393 at 156.461 kb on + strand, within H281DRAFT_05393 at 156.462 kb on - strand, within H281DRAFT_05393 at 156.462 kb on - strand, within H281DRAFT_05393 at 156.462 kb on - strand, within H281DRAFT_05393 at 156.462 kb on - strand, within H281DRAFT_05393 at 156.549 kb on + strand, within H281DRAFT_05393 at 156.550 kb on - strand, within H281DRAFT_05393 at 156.607 kb on - strand, within H281DRAFT_05393 at 156.658 kb on - strand, within H281DRAFT_05393 at 156.658 kb on - strand, within H281DRAFT_05393 at 156.699 kb on + strand at 156.699 kb on + strand, within H281DRAFT_05393 at 156.700 kb on - strand, within H281DRAFT_05393 at 156.741 kb on + strand, within H281DRAFT_05393 at 156.742 kb on - strand, within H281DRAFT_05393 at 156.743 kb on + strand, within H281DRAFT_05393 at 156.743 kb on + strand, within H281DRAFT_05393 at 156.759 kb on + strand, within H281DRAFT_05393 at 156.759 kb on + strand, within H281DRAFT_05393 at 156.759 kb on + strand, within H281DRAFT_05393 at 156.760 kb on - strand, within H281DRAFT_05393 at 156.766 kb on - strand, within H281DRAFT_05393 at 156.793 kb on - strand, within H281DRAFT_05393 at 156.797 kb on - strand, within H281DRAFT_05393 at 156.807 kb on - strand, within H281DRAFT_05393 at 156.878 kb on - strand, within H281DRAFT_05393 at 156.893 kb on + strand, within H281DRAFT_05393 at 156.894 kb on - strand, within H281DRAFT_05393 at 156.894 kb on - strand, within H281DRAFT_05393 at 156.894 kb on - strand, within H281DRAFT_05393 at 156.899 kb on + strand, within H281DRAFT_05393 at 156.899 kb on + strand, within H281DRAFT_05393 at 156.946 kb on - strand, within H281DRAFT_05393 at 156.970 kb on - strand, within H281DRAFT_05393 at 157.023 kb on + strand, within H281DRAFT_05393 at 157.086 kb on + strand, within H281DRAFT_05393 at 157.086 kb on + strand, within H281DRAFT_05393 at 157.087 kb on - strand, within H281DRAFT_05393 at 157.087 kb on - strand, within H281DRAFT_05393 at 157.087 kb on - strand, within H281DRAFT_05393 at 157.094 kb on + strand, within H281DRAFT_05393 at 157.095 kb on - strand, within H281DRAFT_05393 at 157.095 kb on - strand, within H281DRAFT_05393 at 157.095 kb on - strand, within H281DRAFT_05393 at 157.107 kb on + strand, within H281DRAFT_05393 at 157.168 kb on - strand, within H281DRAFT_05393 at 157.168 kb on - strand, within H281DRAFT_05393 at 157.194 kb on + strand, within H281DRAFT_05393 at 157.194 kb on + strand, within H281DRAFT_05393 at 157.195 kb on - strand, within H281DRAFT_05393 at 157.195 kb on - strand, within H281DRAFT_05393 at 157.259 kb on + strand at 157.260 kb on - strand at 157.287 kb on - strand at 157.332 kb on + strand at 157.370 kb on - strand at 157.590 kb on + strand, within H281DRAFT_05394 at 157.591 kb on - strand, within H281DRAFT_05394 at 157.771 kb on + strand at 157.771 kb on + strand at 157.771 kb on + strand at 157.772 kb on - strand at 157.772 kb on - strand at 157.772 kb on - strand at 157.848 kb on + strand at 157.908 kb on + strand at 157.909 kb on - strand at 157.909 kb on - strand at 157.909 kb on - strand at 157.923 kb on + strand at 157.938 kb on - strand at 157.974 kb on - strand at 158.093 kb on + strand at 158.094 kb on - strand at 158.148 kb on + strand, within H281DRAFT_05395 at 158.148 kb on + strand, within H281DRAFT_05395 at 158.148 kb on + strand, within H281DRAFT_05395 at 158.191 kb on + strand, within H281DRAFT_05395 at 158.191 kb on + strand, within H281DRAFT_05395 at 158.192 kb on - strand, within H281DRAFT_05395 at 158.192 kb on - strand, within H281DRAFT_05395
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 155,261 - H281DRAFT_05392 0.60 -0.3 155,261 - H281DRAFT_05392 0.60 -0.2 155,284 + H281DRAFT_05392 0.63 -0.4 155,285 - H281DRAFT_05392 0.63 -0.1 155,581 + H281DRAFT_05392 0.89 -0.4 155,582 - -0.8 155,706 + +1.8 155,707 - +0.4 155,853 + -0.2 155,912 - -0.4 155,912 - -0.3 155,985 + +1.8 156,027 - -0.0 156,058 - +0.4 156,097 - +0.3 156,097 - +0.6 156,112 + +0.7 156,113 - +2.6 156,113 - +0.2 156,265 - +0.6 156,265 - +0.9 156,322 - H281DRAFT_05393 0.13 -0.2 156,461 + H281DRAFT_05393 0.25 +0.5 156,461 + H281DRAFT_05393 0.25 +0.8 156,461 + H281DRAFT_05393 0.25 -0.1 156,462 - H281DRAFT_05393 0.25 -0.5 156,462 - H281DRAFT_05393 0.25 -0.4 156,462 - H281DRAFT_05393 0.25 -0.9 156,462 - H281DRAFT_05393 0.25 +1.8 156,549 + H281DRAFT_05393 0.32 +0.3 156,550 - H281DRAFT_05393 0.32 +0.4 156,607 - H281DRAFT_05393 0.37 -0.8 156,658 - H281DRAFT_05393 0.42 -0.1 156,658 - H281DRAFT_05393 0.42 -0.3 156,699 + +2.0 156,699 + H281DRAFT_05393 0.45 -0.5 156,700 - H281DRAFT_05393 0.45 -1.0 156,741 + H281DRAFT_05393 0.49 +0.2 156,742 - H281DRAFT_05393 0.49 +0.4 156,743 + H281DRAFT_05393 0.49 +1.3 156,743 + H281DRAFT_05393 0.49 +0.1 156,759 + H281DRAFT_05393 0.50 +0.1 156,759 + H281DRAFT_05393 0.50 +1.7 156,759 + H281DRAFT_05393 0.50 -1.2 156,760 - H281DRAFT_05393 0.50 -1.2 156,766 - H281DRAFT_05393 0.51 +0.2 156,793 - H281DRAFT_05393 0.53 +0.2 156,797 - H281DRAFT_05393 0.54 -0.0 156,807 - H281DRAFT_05393 0.55 +1.3 156,878 - H281DRAFT_05393 0.61 -0.6 156,893 + H281DRAFT_05393 0.62 -1.1 156,894 - H281DRAFT_05393 0.62 +0.5 156,894 - H281DRAFT_05393 0.62 -0.9 156,894 - H281DRAFT_05393 0.62 -1.1 156,899 + H281DRAFT_05393 0.62 -0.1 156,899 + H281DRAFT_05393 0.62 +0.1 156,946 - H281DRAFT_05393 0.66 -0.9 156,970 - H281DRAFT_05393 0.69 -0.4 157,023 + H281DRAFT_05393 0.73 +0.2 157,086 + H281DRAFT_05393 0.79 +0.6 157,086 + H281DRAFT_05393 0.79 -0.1 157,087 - H281DRAFT_05393 0.79 +0.9 157,087 - H281DRAFT_05393 0.79 -0.2 157,087 - H281DRAFT_05393 0.79 -0.4 157,094 + H281DRAFT_05393 0.79 +0.1 157,095 - H281DRAFT_05393 0.79 +0.1 157,095 - H281DRAFT_05393 0.79 +0.4 157,095 - H281DRAFT_05393 0.79 -0.1 157,107 + H281DRAFT_05393 0.80 +0.2 157,168 - H281DRAFT_05393 0.86 +0.5 157,168 - H281DRAFT_05393 0.86 +0.0 157,194 + H281DRAFT_05393 0.88 +0.4 157,194 + H281DRAFT_05393 0.88 +0.7 157,195 - H281DRAFT_05393 0.88 -1.5 157,195 - H281DRAFT_05393 0.88 -0.3 157,259 + +0.1 157,260 - -0.3 157,287 - -0.2 157,332 + +1.9 157,370 - -0.7 157,590 + H281DRAFT_05394 0.45 -1.0 157,591 - H281DRAFT_05394 0.46 +0.3 157,771 + +0.3 157,771 + +1.4 157,771 + -1.5 157,772 - +0.3 157,772 - -0.0 157,772 - -1.1 157,848 + +0.1 157,908 + +0.4 157,909 - -0.4 157,909 - -0.3 157,909 - -0.6 157,923 + +0.4 157,938 - -0.3 157,974 - +0.9 158,093 + +0.1 158,094 - +0.7 158,148 + H281DRAFT_05395 0.23 -0.2 158,148 + H281DRAFT_05395 0.23 +0.1 158,148 + H281DRAFT_05395 0.23 +0.4 158,191 + H281DRAFT_05395 0.33 -1.0 158,191 + H281DRAFT_05395 0.33 -0.3 158,192 - H281DRAFT_05395 0.33 -1.0 158,192 - H281DRAFT_05395 0.33 -1.9
Or see this region's nucleotide sequence