Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05257 and H281DRAFT_05258 are separated by 2 nucleotides H281DRAFT_05258 and H281DRAFT_05259 are separated by 153 nucleotides
H281DRAFT_05257: H281DRAFT_05257 - hypothetical protein, at 28 to 81
_05257
H281DRAFT_05258: H281DRAFT_05258 - 5S rRNA. Bacterial TSU, at 84 to 197
_05258
H281DRAFT_05259: H281DRAFT_05259 - transcriptional regulator, LysR family, at 351 to 1,346
_05259
Position (kb) 0
1 Strain fitness (log2 ratio) -2
-1
0
1 at 0.260 kb on - strand at 0.352 kb on + strand at 0.457 kb on - strand, within H281DRAFT_05259 at 0.530 kb on - strand, within H281DRAFT_05259 at 0.562 kb on + strand, within H281DRAFT_05259 at 0.639 kb on + strand, within H281DRAFT_05259 at 0.677 kb on + strand, within H281DRAFT_05259 at 0.765 kb on - strand, within H281DRAFT_05259 at 0.833 kb on - strand, within H281DRAFT_05259 at 0.852 kb on + strand, within H281DRAFT_05259 at 0.853 kb on - strand, within H281DRAFT_05259 at 0.866 kb on + strand, within H281DRAFT_05259 at 0.966 kb on + strand, within H281DRAFT_05259 at 1.030 kb on + strand, within H281DRAFT_05259 at 1.030 kb on + strand, within H281DRAFT_05259 at 1.030 kb on + strand, within H281DRAFT_05259 at 1.031 kb on - strand, within H281DRAFT_05259 at 1.031 kb on - strand, within H281DRAFT_05259 at 1.056 kb on - strand, within H281DRAFT_05259 at 1.061 kb on + strand, within H281DRAFT_05259 at 1.132 kb on - strand, within H281DRAFT_05259 at 1.153 kb on + strand, within H281DRAFT_05259 at 1.169 kb on + strand, within H281DRAFT_05259
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 260 - -0.1 352 + -0.1 457 - H281DRAFT_05259 0.11 -0.7 530 - H281DRAFT_05259 0.18 -0.3 562 + H281DRAFT_05259 0.21 +0.7 639 + H281DRAFT_05259 0.29 -1.6 677 + H281DRAFT_05259 0.33 -0.5 765 - H281DRAFT_05259 0.42 +0.5 833 - H281DRAFT_05259 0.48 -0.5 852 + H281DRAFT_05259 0.50 -1.1 853 - H281DRAFT_05259 0.50 -2.2 866 + H281DRAFT_05259 0.52 +0.5 966 + H281DRAFT_05259 0.62 +0.7 1,030 + H281DRAFT_05259 0.68 -1.7 1,030 + H281DRAFT_05259 0.68 -1.2 1,030 + H281DRAFT_05259 0.68 -0.9 1,031 - H281DRAFT_05259 0.68 +0.0 1,031 - H281DRAFT_05259 0.68 +0.1 1,056 - H281DRAFT_05259 0.71 -0.9 1,061 + H281DRAFT_05259 0.71 +0.1 1,132 - H281DRAFT_05259 0.78 -0.3 1,153 + H281DRAFT_05259 0.81 +0.1 1,169 + H281DRAFT_05259 0.82 -1.1
Or see this region's nucleotide sequence