Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05208 and H281DRAFT_05209 are separated by 116 nucleotides H281DRAFT_05209 and H281DRAFT_05210 are separated by 174 nucleotides
H281DRAFT_05208: H281DRAFT_05208 - conserved hypothetical integral membrane protein, at 170,249 to 171,337
_05208
H281DRAFT_05209: H281DRAFT_05209 - transcriptional regulator, LysR family, at 171,454 to 172,344
_05209
H281DRAFT_05210: H281DRAFT_05210 - Sugar phosphate isomerase/epimerase, at 172,519 to 173,292
_05210
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 170.548 kb on + strand, within H281DRAFT_05208 at 170.548 kb on + strand, within H281DRAFT_05208 at 170.656 kb on + strand, within H281DRAFT_05208 at 170.657 kb on - strand, within H281DRAFT_05208 at 171.370 kb on - strand at 171.386 kb on + strand at 171.390 kb on + strand at 171.391 kb on - strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.393 kb on - strand at 171.393 kb on - strand at 171.595 kb on + strand, within H281DRAFT_05209 at 171.595 kb on + strand, within H281DRAFT_05209 at 171.596 kb on - strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.696 kb on + strand, within H281DRAFT_05209 at 171.697 kb on - strand, within H281DRAFT_05209 at 171.763 kb on + strand, within H281DRAFT_05209 at 171.764 kb on - strand, within H281DRAFT_05209 at 171.838 kb on - strand, within H281DRAFT_05209 at 171.873 kb on + strand, within H281DRAFT_05209 at 172.348 kb on - strand at 172.538 kb on + strand at 173.090 kb on - strand, within H281DRAFT_05210 at 173.301 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 170,548 + H281DRAFT_05208 0.27 -0.8 170,548 + H281DRAFT_05208 0.27 +1.6 170,656 + H281DRAFT_05208 0.37 +0.7 170,657 - H281DRAFT_05208 0.37 +0.3 171,370 - +0.4 171,386 + -1.8 171,390 + +0.6 171,391 - -0.7 171,392 + +0.1 171,392 + +0.7 171,392 + -0.3 171,392 + -0.7 171,392 + +0.3 171,392 + -0.0 171,392 + -0.8 171,392 + -0.3 171,392 + +0.1 171,393 - -0.2 171,393 - +0.2 171,595 + H281DRAFT_05209 0.16 +0.4 171,595 + H281DRAFT_05209 0.16 +0.3 171,596 - H281DRAFT_05209 0.16 +0.9 171,694 + H281DRAFT_05209 0.27 +0.2 171,694 + H281DRAFT_05209 0.27 -0.0 171,694 + H281DRAFT_05209 0.27 -0.6 171,694 + H281DRAFT_05209 0.27 -0.3 171,695 - H281DRAFT_05209 0.27 +0.1 171,695 - H281DRAFT_05209 0.27 +1.1 171,695 - H281DRAFT_05209 0.27 +0.2 171,695 - H281DRAFT_05209 0.27 -0.1 171,696 + H281DRAFT_05209 0.27 -1.1 171,697 - H281DRAFT_05209 0.27 +0.1 171,763 + H281DRAFT_05209 0.35 +0.1 171,764 - H281DRAFT_05209 0.35 -0.8 171,838 - H281DRAFT_05209 0.43 +0.3 171,873 + H281DRAFT_05209 0.47 +0.2 172,348 - -0.2 172,538 + +0.3 173,090 - H281DRAFT_05210 0.74 -0.4 173,301 + -1.3
Or see this region's nucleotide sequence