Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04911 and H281DRAFT_04912 are separated by 40 nucleotides H281DRAFT_04912 and H281DRAFT_04913 are separated by 67 nucleotides H281DRAFT_04913 and H281DRAFT_04914 are separated by 314 nucleotides
H281DRAFT_04911: H281DRAFT_04911 - Predicted oxidoreductase, at 70,526 to 71,551
_04911
H281DRAFT_04912: H281DRAFT_04912 - Glycosyltransferase family 9 (heptosyltransferase), at 71,592 to 73,316
_04912
H281DRAFT_04913: H281DRAFT_04913 - Predicted outer membrane protein, at 73,384 to 73,944
_04913
H281DRAFT_04914: H281DRAFT_04914 - CheW protein, at 74,259 to 75,233
_04914
Position (kb) 71
72
73
74 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 70.804 kb on - strand, within H281DRAFT_04911 at 70.992 kb on + strand, within H281DRAFT_04911 at 70.996 kb on - strand, within H281DRAFT_04911 at 71.014 kb on - strand at 71.191 kb on - strand, within H281DRAFT_04911 at 71.191 kb on - strand, within H281DRAFT_04911 at 71.367 kb on + strand, within H281DRAFT_04911 at 71.367 kb on + strand, within H281DRAFT_04911 at 71.367 kb on + strand, within H281DRAFT_04911 at 71.544 kb on + strand at 71.570 kb on + strand at 71.571 kb on - strand at 72.318 kb on + strand, within H281DRAFT_04912 at 72.319 kb on - strand, within H281DRAFT_04912 at 72.502 kb on + strand, within H281DRAFT_04912 at 72.502 kb on + strand, within H281DRAFT_04912 at 72.502 kb on + strand, within H281DRAFT_04912 at 72.503 kb on - strand, within H281DRAFT_04912 at 72.503 kb on - strand, within H281DRAFT_04912 at 72.660 kb on - strand, within H281DRAFT_04912 at 72.707 kb on - strand, within H281DRAFT_04912 at 73.057 kb on + strand, within H281DRAFT_04912 at 73.058 kb on - strand, within H281DRAFT_04912 at 73.217 kb on - strand at 73.277 kb on + strand at 73.277 kb on + strand at 73.437 kb on - strand at 73.563 kb on + strand, within H281DRAFT_04913 at 73.563 kb on + strand, within H281DRAFT_04913 at 73.563 kb on + strand, within H281DRAFT_04913 at 73.563 kb on + strand, within H281DRAFT_04913 at 73.563 kb on + strand, within H281DRAFT_04913 at 73.564 kb on - strand, within H281DRAFT_04913 at 73.565 kb on + strand, within H281DRAFT_04913 at 73.565 kb on + strand, within H281DRAFT_04913 at 73.565 kb on + strand, within H281DRAFT_04913 at 73.566 kb on - strand, within H281DRAFT_04913 at 73.686 kb on + strand, within H281DRAFT_04913 at 73.687 kb on - strand, within H281DRAFT_04913 at 74.024 kb on + strand at 74.100 kb on + strand at 74.196 kb on + strand at 74.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 70,804 - H281DRAFT_04911 0.27 +0.9 70,992 + H281DRAFT_04911 0.45 +1.2 70,996 - H281DRAFT_04911 0.46 +0.2 71,014 - +3.8 71,191 - H281DRAFT_04911 0.65 -0.3 71,191 - H281DRAFT_04911 0.65 -0.5 71,367 + H281DRAFT_04911 0.82 +0.2 71,367 + H281DRAFT_04911 0.82 +0.3 71,367 + H281DRAFT_04911 0.82 -1.0 71,544 + +0.2 71,570 + -0.6 71,571 - -0.9 72,318 + H281DRAFT_04912 0.42 +0.3 72,319 - H281DRAFT_04912 0.42 +1.6 72,502 + H281DRAFT_04912 0.53 +0.0 72,502 + H281DRAFT_04912 0.53 +0.3 72,502 + H281DRAFT_04912 0.53 -0.3 72,503 - H281DRAFT_04912 0.53 +0.5 72,503 - H281DRAFT_04912 0.53 -0.6 72,660 - H281DRAFT_04912 0.62 -0.1 72,707 - H281DRAFT_04912 0.65 +0.5 73,057 + H281DRAFT_04912 0.85 +0.1 73,058 - H281DRAFT_04912 0.85 +1.2 73,217 - +0.6 73,277 + +0.0 73,277 + -0.0 73,437 - -0.6 73,563 + H281DRAFT_04913 0.32 -1.2 73,563 + H281DRAFT_04913 0.32 -0.3 73,563 + H281DRAFT_04913 0.32 +0.7 73,563 + H281DRAFT_04913 0.32 -0.2 73,563 + H281DRAFT_04913 0.32 +0.3 73,564 - H281DRAFT_04913 0.32 +0.7 73,565 + H281DRAFT_04913 0.32 +0.2 73,565 + H281DRAFT_04913 0.32 -0.2 73,565 + H281DRAFT_04913 0.32 +0.1 73,566 - H281DRAFT_04913 0.32 -0.0 73,686 + H281DRAFT_04913 0.54 +0.4 73,687 - H281DRAFT_04913 0.54 -0.4 74,024 + +0.3 74,100 + -0.7 74,196 + +0.8 74,196 + +0.1
Or see this region's nucleotide sequence