Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04881 and H281DRAFT_04882 are separated by 110 nucleotides H281DRAFT_04882 and H281DRAFT_04883 are separated by 97 nucleotides H281DRAFT_04883 and H281DRAFT_04884 are separated by 37 nucleotides
H281DRAFT_04881: H281DRAFT_04881 - Predicted arabinose efflux permease, MFS family, at 25,030 to 26,286
_04881
H281DRAFT_04882: H281DRAFT_04882 - transcriptional regulator, LysR family, at 26,397 to 27,290
_04882
H281DRAFT_04883: H281DRAFT_04883 - L-lysine exporter family protein LysE/ArgO, at 27,388 to 28,008
_04883
H281DRAFT_04884: H281DRAFT_04884 - extracellular protein, at 28,046 to 28,948
_04884
Position (kb) 26
27
28 Strain fitness (log2 ratio) -1
0
1 at 26.284 kb on + strand at 26.482 kb on + strand at 26.520 kb on + strand, within H281DRAFT_04882 at 27.316 kb on - strand at 27.330 kb on + strand at 27.422 kb on + strand at 27.781 kb on + strand, within H281DRAFT_04883 at 28.016 kb on + strand at 28.179 kb on + strand, within H281DRAFT_04884 at 28.180 kb on - strand, within H281DRAFT_04884 at 28.180 kb on - strand, within H281DRAFT_04884 at 28.261 kb on + strand, within H281DRAFT_04884 at 28.272 kb on + strand, within H281DRAFT_04884
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 26,284 + -0.1 26,482 + +0.4 26,520 + H281DRAFT_04882 0.14 +0.1 27,316 - +0.4 27,330 + +0.1 27,422 + +0.2 27,781 + H281DRAFT_04883 0.63 +0.8 28,016 + -0.8 28,179 + H281DRAFT_04884 0.15 -0.6 28,180 - H281DRAFT_04884 0.15 -0.5 28,180 - H281DRAFT_04884 0.15 +0.2 28,261 + H281DRAFT_04884 0.24 +0.4 28,272 + H281DRAFT_04884 0.25 +0.3
Or see this region's nucleotide sequence