Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04821

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04820 and H281DRAFT_04821 are separated by 203 nucleotidesH281DRAFT_04821 and H281DRAFT_04822 are separated by 396 nucleotides H281DRAFT_04820: H281DRAFT_04820 - Bis(5'nucleosyl)-tetraphosphatase, ApaH, at 254,819 to 255,703 _04820 H281DRAFT_04821: H281DRAFT_04821 - Nucleoside-diphosphate-sugar epimerase, at 255,907 to 256,818 _04821 H281DRAFT_04822: H281DRAFT_04822 - dTDP-glucose 4,6-dehydratase, at 257,215 to 258,276 _04822 Position (kb) 255 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 255.177 kb on - strand, within H281DRAFT_04820at 255.195 kb on + strand, within H281DRAFT_04820at 255.328 kb on - strand, within H281DRAFT_04820at 255.784 kb on + strandat 255.784 kb on + strandat 255.784 kb on + strandat 255.784 kb on + strandat 255.784 kb on + strandat 255.784 kb on + strandat 255.787 kb on + strandat 255.787 kb on + strandat 255.787 kb on + strandat 255.788 kb on - strandat 255.976 kb on + strandat 256.124 kb on - strand, within H281DRAFT_04821at 256.124 kb on - strand, within H281DRAFT_04821at 256.124 kb on - strand, within H281DRAFT_04821at 256.124 kb on - strand, within H281DRAFT_04821at 256.124 kb on - strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.126 kb on - strand, within H281DRAFT_04821at 256.239 kb on + strand, within H281DRAFT_04821at 256.239 kb on + strand, within H281DRAFT_04821at 256.240 kb on - strand, within H281DRAFT_04821at 256.279 kb on + strand, within H281DRAFT_04821at 256.279 kb on + strand, within H281DRAFT_04821at 256.279 kb on + strand, within H281DRAFT_04821at 256.279 kb on + strand, within H281DRAFT_04821at 256.280 kb on - strand, within H281DRAFT_04821at 256.280 kb on - strand, within H281DRAFT_04821at 256.339 kb on + strand, within H281DRAFT_04821at 256.339 kb on + strand, within H281DRAFT_04821at 256.339 kb on + strand, within H281DRAFT_04821at 256.340 kb on - strand, within H281DRAFT_04821at 256.423 kb on + strand, within H281DRAFT_04821at 256.424 kb on - strand, within H281DRAFT_04821at 256.424 kb on - strand, within H281DRAFT_04821at 256.424 kb on - strand, within H281DRAFT_04821at 256.424 kb on - strand, within H281DRAFT_04821at 256.497 kb on + strand, within H281DRAFT_04821at 256.513 kb on - strand, within H281DRAFT_04821at 256.547 kb on - strand, within H281DRAFT_04821at 256.547 kb on - strand, within H281DRAFT_04821at 256.562 kb on - strand, within H281DRAFT_04821at 256.562 kb on - strand, within H281DRAFT_04821at 256.626 kb on + strand, within H281DRAFT_04821at 256.626 kb on + strand, within H281DRAFT_04821at 256.627 kb on - strand, within H281DRAFT_04821at 256.627 kb on - strand, within H281DRAFT_04821at 256.627 kb on - strand, within H281DRAFT_04821at 256.627 kb on - strand, within H281DRAFT_04821at 256.776 kb on + strandat 256.792 kb on - strandat 256.913 kb on - strandat 256.931 kb on + strandat 256.931 kb on + strandat 256.932 kb on - strandat 256.933 kb on + strandat 256.933 kb on + strandat 256.934 kb on - strandat 256.934 kb on - strandat 256.934 kb on - strandat 256.934 kb on - strandat 256.940 kb on + strandat 256.941 kb on - strandat 256.941 kb on - strandat 256.942 kb on + strandat 256.942 kb on + strandat 256.943 kb on - strandat 256.943 kb on - strandat 256.946 kb on + strandat 256.946 kb on + strandat 257.038 kb on + strandat 257.047 kb on - strandat 257.071 kb on - strandat 257.071 kb on - strandat 257.085 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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255,177 - H281DRAFT_04820 0.40 +0.7
255,195 + H281DRAFT_04820 0.42 +0.8
255,328 - H281DRAFT_04820 0.58 -0.4
255,784 + -0.5
255,784 + -0.6
255,784 + +0.1
255,784 + -0.1
255,784 + -1.5
255,784 + +0.4
255,787 + +0.3
255,787 + -0.1
255,787 + -0.2
255,788 - +0.0
255,976 + +0.0
256,124 - H281DRAFT_04821 0.24 -0.4
256,124 - H281DRAFT_04821 0.24 -0.4
256,124 - H281DRAFT_04821 0.24 +0.3
256,124 - H281DRAFT_04821 0.24 +0.4
256,124 - H281DRAFT_04821 0.24 -1.2
256,125 + H281DRAFT_04821 0.24 -0.2
256,125 + H281DRAFT_04821 0.24 -0.6
256,125 + H281DRAFT_04821 0.24 +0.5
256,125 + H281DRAFT_04821 0.24 -0.3
256,125 + H281DRAFT_04821 0.24 +0.5
256,125 + H281DRAFT_04821 0.24 -0.3
256,126 - H281DRAFT_04821 0.24 +0.6
256,239 + H281DRAFT_04821 0.36 +1.1
256,239 + H281DRAFT_04821 0.36 -0.7
256,240 - H281DRAFT_04821 0.37 +0.2
256,279 + H281DRAFT_04821 0.41 +0.6
256,279 + H281DRAFT_04821 0.41 +0.6
256,279 + H281DRAFT_04821 0.41 +0.1
256,279 + H281DRAFT_04821 0.41 -0.0
256,280 - H281DRAFT_04821 0.41 -1.0
256,280 - H281DRAFT_04821 0.41 -0.5
256,339 + H281DRAFT_04821 0.47 +0.0
256,339 + H281DRAFT_04821 0.47 -2.9
256,339 + H281DRAFT_04821 0.47 -0.2
256,340 - H281DRAFT_04821 0.47 +0.5
256,423 + H281DRAFT_04821 0.57 +0.2
256,424 - H281DRAFT_04821 0.57 +0.9
256,424 - H281DRAFT_04821 0.57 -0.1
256,424 - H281DRAFT_04821 0.57 -0.1
256,424 - H281DRAFT_04821 0.57 -0.8
256,497 + H281DRAFT_04821 0.65 -1.8
256,513 - H281DRAFT_04821 0.66 +0.0
256,547 - H281DRAFT_04821 0.70 +0.8
256,547 - H281DRAFT_04821 0.70 +0.9
256,562 - H281DRAFT_04821 0.72 -1.0
256,562 - H281DRAFT_04821 0.72 -0.1
256,626 + H281DRAFT_04821 0.79 +1.0
256,626 + H281DRAFT_04821 0.79 +0.4
256,627 - H281DRAFT_04821 0.79 -0.1
256,627 - H281DRAFT_04821 0.79 -0.6
256,627 - H281DRAFT_04821 0.79 -0.2
256,627 - H281DRAFT_04821 0.79 +0.3
256,776 + +2.3
256,792 - -0.4
256,913 - +0.4
256,931 + -0.2
256,931 + +1.5
256,932 - -0.2
256,933 + -0.2
256,933 + +0.5
256,934 - -0.5
256,934 - +0.3
256,934 - -0.1
256,934 - +0.1
256,940 + -0.6
256,941 - -0.4
256,941 - -0.4
256,942 + -0.2
256,942 + +0.8
256,943 - -0.8
256,943 - +0.1
256,946 + -0.0
256,946 + +1.1
257,038 + +1.0
257,047 - +0.5
257,071 - +1.0
257,071 - +4.0
257,085 + +0.1

Or see this region's nucleotide sequence