Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04476 and H281DRAFT_04477 are separated by 155 nucleotides H281DRAFT_04477 and H281DRAFT_04478 are separated by 224 nucleotides H281DRAFT_04478 and H281DRAFT_04479 are separated by 80 nucleotides
H281DRAFT_04476: H281DRAFT_04476 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 207,045 to 208,709
_04476
H281DRAFT_04477: H281DRAFT_04477 - transcriptional regulator, LysR family, at 208,865 to 209,803
_04477
H281DRAFT_04478: H281DRAFT_04478 - hypothetical protein, at 210,028 to 210,186
_04478
H281DRAFT_04479: H281DRAFT_04479 - DNA repair exonuclease, at 210,267 to 211,085
_04479
Position (kb) 208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2 at 208.021 kb on - strand, within H281DRAFT_04476 at 208.021 kb on - strand, within H281DRAFT_04476 at 208.123 kb on + strand, within H281DRAFT_04476 at 208.124 kb on - strand, within H281DRAFT_04476 at 208.144 kb on + strand, within H281DRAFT_04476 at 208.267 kb on + strand, within H281DRAFT_04476 at 208.267 kb on + strand, within H281DRAFT_04476 at 208.268 kb on - strand, within H281DRAFT_04476 at 208.331 kb on - strand, within H281DRAFT_04476 at 208.331 kb on - strand, within H281DRAFT_04476 at 208.331 kb on - strand, within H281DRAFT_04476 at 208.331 kb on - strand, within H281DRAFT_04476 at 208.333 kb on + strand, within H281DRAFT_04476 at 208.333 kb on + strand, within H281DRAFT_04476 at 208.334 kb on - strand, within H281DRAFT_04476 at 208.602 kb on - strand at 208.654 kb on - strand at 208.665 kb on - strand at 208.731 kb on + strand at 208.731 kb on + strand at 208.731 kb on + strand at 208.732 kb on - strand at 208.732 kb on - strand at 208.732 kb on - strand at 208.864 kb on + strand at 208.864 kb on + strand at 208.871 kb on - strand at 208.890 kb on + strand at 208.890 kb on + strand at 208.890 kb on + strand at 208.891 kb on - strand at 208.945 kb on + strand at 208.946 kb on - strand at 208.946 kb on - strand at 208.958 kb on + strand at 208.958 kb on + strand at 209.058 kb on - strand, within H281DRAFT_04477 at 209.058 kb on - strand, within H281DRAFT_04477 at 209.088 kb on - strand, within H281DRAFT_04477 at 209.088 kb on - strand, within H281DRAFT_04477 at 209.088 kb on - strand, within H281DRAFT_04477 at 209.088 kb on - strand, within H281DRAFT_04477 at 209.180 kb on + strand, within H281DRAFT_04477 at 209.180 kb on + strand, within H281DRAFT_04477 at 209.181 kb on - strand, within H281DRAFT_04477 at 209.181 kb on - strand, within H281DRAFT_04477 at 209.359 kb on + strand, within H281DRAFT_04477 at 209.359 kb on + strand, within H281DRAFT_04477 at 209.359 kb on + strand, within H281DRAFT_04477 at 209.360 kb on - strand, within H281DRAFT_04477 at 209.360 kb on - strand, within H281DRAFT_04477 at 209.378 kb on + strand, within H281DRAFT_04477 at 209.379 kb on - strand, within H281DRAFT_04477 at 209.652 kb on - strand, within H281DRAFT_04477 at 209.676 kb on - strand, within H281DRAFT_04477 at 209.684 kb on + strand, within H281DRAFT_04477 at 209.699 kb on + strand, within H281DRAFT_04477 at 209.886 kb on - strand at 209.886 kb on - strand at 209.886 kb on - strand at 209.914 kb on + strand at 209.977 kb on - strand at 209.977 kb on - strand at 210.268 kb on + strand at 210.268 kb on + strand at 210.268 kb on + strand at 210.269 kb on - strand at 210.270 kb on + strand at 210.270 kb on + strand at 210.270 kb on + strand at 210.270 kb on + strand at 210.271 kb on - strand at 210.411 kb on + strand, within H281DRAFT_04479 at 210.412 kb on - strand, within H281DRAFT_04479 at 210.481 kb on + strand, within H281DRAFT_04479 at 210.482 kb on - strand, within H281DRAFT_04479 at 210.640 kb on + strand, within H281DRAFT_04479 at 210.640 kb on + strand, within H281DRAFT_04479 at 210.641 kb on - strand, within H281DRAFT_04479
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 208,021 - H281DRAFT_04476 0.59 +0.1 208,021 - H281DRAFT_04476 0.59 -0.7 208,123 + H281DRAFT_04476 0.65 -0.8 208,124 - H281DRAFT_04476 0.65 -1.4 208,144 + H281DRAFT_04476 0.66 -0.6 208,267 + H281DRAFT_04476 0.73 -0.3 208,267 + H281DRAFT_04476 0.73 -1.5 208,268 - H281DRAFT_04476 0.73 -0.7 208,331 - H281DRAFT_04476 0.77 -0.3 208,331 - H281DRAFT_04476 0.77 -0.9 208,331 - H281DRAFT_04476 0.77 -1.8 208,331 - H281DRAFT_04476 0.77 -1.0 208,333 + H281DRAFT_04476 0.77 -2.0 208,333 + H281DRAFT_04476 0.77 +1.0 208,334 - H281DRAFT_04476 0.77 -0.9 208,602 - -1.7 208,654 - -0.2 208,665 - -0.5 208,731 + -1.4 208,731 + -1.2 208,731 + -0.0 208,732 - +0.1 208,732 - -0.8 208,732 - -0.4 208,864 + -0.6 208,864 + -0.5 208,871 - -1.0 208,890 + -0.4 208,890 + +0.3 208,890 + +0.1 208,891 - +0.7 208,945 + +0.1 208,946 - -0.3 208,946 - -0.8 208,958 + -1.1 208,958 + -1.8 209,058 - H281DRAFT_04477 0.21 +0.5 209,058 - H281DRAFT_04477 0.21 +0.8 209,088 - H281DRAFT_04477 0.24 -0.3 209,088 - H281DRAFT_04477 0.24 +0.5 209,088 - H281DRAFT_04477 0.24 +0.9 209,088 - H281DRAFT_04477 0.24 -1.1 209,180 + H281DRAFT_04477 0.34 +0.3 209,180 + H281DRAFT_04477 0.34 -0.0 209,181 - H281DRAFT_04477 0.34 -0.0 209,181 - H281DRAFT_04477 0.34 +0.3 209,359 + H281DRAFT_04477 0.53 +0.1 209,359 + H281DRAFT_04477 0.53 +0.2 209,359 + H281DRAFT_04477 0.53 +0.8 209,360 - H281DRAFT_04477 0.53 +0.0 209,360 - H281DRAFT_04477 0.53 +1.0 209,378 + H281DRAFT_04477 0.55 -0.7 209,379 - H281DRAFT_04477 0.55 +0.2 209,652 - H281DRAFT_04477 0.84 +0.4 209,676 - H281DRAFT_04477 0.86 -0.1 209,684 + H281DRAFT_04477 0.87 +2.3 209,699 + H281DRAFT_04477 0.89 -1.2 209,886 - +2.3 209,886 - +0.3 209,886 - -0.0 209,914 + -0.5 209,977 - +0.4 209,977 - -0.8 210,268 + +0.1 210,268 + +0.2 210,268 + +0.4 210,269 - -0.1 210,270 + -1.0 210,270 + +0.0 210,270 + -0.3 210,270 + +0.0 210,271 - +1.1 210,411 + H281DRAFT_04479 0.18 -1.1 210,412 - H281DRAFT_04479 0.18 -0.7 210,481 + H281DRAFT_04479 0.26 -0.6 210,482 - H281DRAFT_04479 0.26 +0.0 210,640 + H281DRAFT_04479 0.46 +0.6 210,640 + H281DRAFT_04479 0.46 +0.1 210,641 - H281DRAFT_04479 0.46 -0.6
Or see this region's nucleotide sequence