Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04334 and H281DRAFT_04335 are separated by 118 nucleotides H281DRAFT_04335 and H281DRAFT_04336 are separated by 80 nucleotides
H281DRAFT_04334: H281DRAFT_04334 - DNA recombination protein RmuC, at 50,267 to 51,715
_04334
H281DRAFT_04335: H281DRAFT_04335 - hypothetical protein, at 51,834 to 52,109
_04335
H281DRAFT_04336: H281DRAFT_04336 - molybdopterin molybdochelatase (EC 2.10.1.1), at 52,190 to 53,491
_04336
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.861 kb on - strand, within H281DRAFT_04334 at 51.045 kb on + strand, within H281DRAFT_04334 at 51.281 kb on + strand, within H281DRAFT_04334 at 51.281 kb on + strand, within H281DRAFT_04334 at 51.321 kb on - strand, within H281DRAFT_04334 at 51.341 kb on + strand, within H281DRAFT_04334 at 51.342 kb on - strand, within H281DRAFT_04334 at 51.392 kb on + strand, within H281DRAFT_04334 at 51.587 kb on - strand at 51.587 kb on - strand at 51.676 kb on - strand at 51.714 kb on - strand at 51.901 kb on + strand, within H281DRAFT_04335 at 51.901 kb on + strand, within H281DRAFT_04335 at 51.901 kb on + strand, within H281DRAFT_04335 at 51.902 kb on - strand, within H281DRAFT_04335 at 51.902 kb on - strand, within H281DRAFT_04335 at 52.048 kb on + strand, within H281DRAFT_04335 at 52.049 kb on - strand, within H281DRAFT_04335 at 52.058 kb on + strand, within H281DRAFT_04335 at 52.059 kb on - strand, within H281DRAFT_04335 at 52.111 kb on + strand at 52.112 kb on - strand at 52.112 kb on - strand at 52.112 kb on - strand at 52.132 kb on - strand at 52.137 kb on + strand at 52.155 kb on - strand at 52.187 kb on - strand at 52.216 kb on + strand at 52.216 kb on + strand at 52.217 kb on - strand at 52.299 kb on - strand at 52.361 kb on + strand, within H281DRAFT_04336 at 52.361 kb on + strand, within H281DRAFT_04336 at 52.361 kb on + strand, within H281DRAFT_04336 at 52.362 kb on - strand, within H281DRAFT_04336 at 52.362 kb on - strand, within H281DRAFT_04336 at 52.362 kb on - strand, within H281DRAFT_04336 at 52.489 kb on - strand, within H281DRAFT_04336 at 52.575 kb on - strand, within H281DRAFT_04336 at 52.575 kb on - strand, within H281DRAFT_04336
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 50,861 - H281DRAFT_04334 0.41 -0.6 51,045 + H281DRAFT_04334 0.54 -0.3 51,281 + H281DRAFT_04334 0.70 -0.1 51,281 + H281DRAFT_04334 0.70 +1.6 51,321 - H281DRAFT_04334 0.73 -1.7 51,341 + H281DRAFT_04334 0.74 +0.9 51,342 - H281DRAFT_04334 0.74 -0.7 51,392 + H281DRAFT_04334 0.78 +1.3 51,587 - -0.6 51,587 - -0.2 51,676 - +1.2 51,714 - -0.4 51,901 + H281DRAFT_04335 0.24 +0.4 51,901 + H281DRAFT_04335 0.24 +1.0 51,901 + H281DRAFT_04335 0.24 +0.9 51,902 - H281DRAFT_04335 0.25 -0.1 51,902 - H281DRAFT_04335 0.25 +2.4 52,048 + H281DRAFT_04335 0.78 +0.2 52,049 - H281DRAFT_04335 0.78 +1.7 52,058 + H281DRAFT_04335 0.81 -0.2 52,059 - H281DRAFT_04335 0.82 +1.2 52,111 + +0.5 52,112 - +1.4 52,112 - +0.6 52,112 - +1.1 52,132 - -0.2 52,137 + -0.0 52,155 - -0.7 52,187 - -1.2 52,216 + -0.2 52,216 + -2.6 52,217 - -0.2 52,299 - +0.5 52,361 + H281DRAFT_04336 0.13 +0.3 52,361 + H281DRAFT_04336 0.13 +2.0 52,361 + H281DRAFT_04336 0.13 +0.4 52,362 - H281DRAFT_04336 0.13 +1.1 52,362 - H281DRAFT_04336 0.13 -1.7 52,362 - H281DRAFT_04336 0.13 -0.5 52,489 - H281DRAFT_04336 0.23 +0.3 52,575 - H281DRAFT_04336 0.30 -0.1 52,575 - H281DRAFT_04336 0.30 +1.6
Or see this region's nucleotide sequence