Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04116 and H281DRAFT_04117 are separated by 504 nucleotides H281DRAFT_04117 and H281DRAFT_04118 are separated by 183 nucleotides H281DRAFT_04118 and H281DRAFT_04119 are separated by 447 nucleotides
H281DRAFT_04116: H281DRAFT_04116 - putative peptidoglycan lipid II flippase, at 226,500 to 228,050
_04116
H281DRAFT_04117: H281DRAFT_04117 - SSU ribosomal protein S20P, at 228,555 to 228,833
_04117
H281DRAFT_04118: H281DRAFT_04118 - Protein of unknown function (DUF3579), at 229,017 to 229,364
_04118
H281DRAFT_04119: H281DRAFT_04119 - ornithine carbamoyltransferase, at 229,812 to 230,741
_04119
Position (kb)
228
229 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 228.060 kb on - strand at 228.060 kb on - strand at 228.060 kb on - strand at 228.063 kb on - strand at 228.063 kb on - strand at 228.063 kb on - strand at 228.063 kb on - strand at 228.064 kb on + strand at 228.064 kb on + strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.859 kb on + strand at 228.860 kb on - strand at 228.924 kb on + strand at 229.373 kb on - strand at 229.556 kb on - strand at 229.619 kb on - strand at 229.750 kb on - strand at 229.756 kb on + strand at 229.757 kb on - strand at 229.802 kb on + strand at 229.802 kb on + strand at 229.802 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 228,060 - +0.6 228,060 - -0.0 228,060 - +0.2 228,063 - -1.1 228,063 - +0.7 228,063 - -0.7 228,063 - -0.2 228,064 + -1.0 228,064 + +0.7 228,065 - +0.6 228,065 - +1.4 228,065 - -0.0 228,065 - +1.0 228,065 - -0.3 228,859 + -1.0 228,860 - +1.0 228,924 + -0.1 229,373 - -0.6 229,556 - +0.2 229,619 - -0.3 229,750 - -2.0 229,756 + -1.3 229,757 - -0.0 229,802 + +3.8 229,802 + -1.1 229,802 + +0.3
Or see this region's nucleotide sequence