Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03889 and H281DRAFT_03890 are separated by 193 nucleotides H281DRAFT_03890 and H281DRAFT_03891 are separated by 216 nucleotides H281DRAFT_03891 and H281DRAFT_03892 are separated by 11 nucleotides
H281DRAFT_03889: H281DRAFT_03889 - circadian clock protein KaiC, at 420,380 to 421,897
_03889
H281DRAFT_03890: H281DRAFT_03890 - Broad specificity phosphatase PhoE, at 422,091 to 422,681
_03890
H281DRAFT_03891: H281DRAFT_03891 - Probable cobalt transporter subunit (CbtB), at 422,898 to 423,119
_03891
H281DRAFT_03892: H281DRAFT_03892 - Uncharacterized membrane protein, predicted cobalt tansporter CbtA, at 423,131 to 423,925
_03892
Position (kb) 422
423 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 421.339 kb on + strand, within H281DRAFT_03889 at 421.369 kb on + strand, within H281DRAFT_03889 at 421.369 kb on + strand, within H281DRAFT_03889 at 421.668 kb on - strand, within H281DRAFT_03889 at 421.702 kb on + strand, within H281DRAFT_03889 at 421.702 kb on + strand, within H281DRAFT_03889 at 421.702 kb on + strand, within H281DRAFT_03889 at 421.703 kb on - strand, within H281DRAFT_03889 at 421.703 kb on - strand, within H281DRAFT_03889 at 421.703 kb on - strand, within H281DRAFT_03889 at 421.703 kb on - strand, within H281DRAFT_03889 at 421.707 kb on + strand, within H281DRAFT_03889 at 421.708 kb on - strand, within H281DRAFT_03889 at 421.768 kb on + strand at 421.797 kb on + strand at 421.797 kb on + strand at 421.797 kb on + strand at 421.797 kb on + strand at 421.797 kb on + strand at 421.798 kb on - strand at 421.897 kb on + strand at 421.898 kb on - strand at 421.908 kb on + strand at 421.908 kb on + strand at 421.908 kb on + strand at 421.908 kb on + strand at 421.909 kb on - strand at 421.909 kb on - strand at 421.909 kb on - strand at 421.918 kb on + strand at 422.030 kb on + strand at 422.030 kb on + strand at 422.030 kb on + strand at 422.067 kb on + strand at 422.067 kb on + strand at 422.068 kb on - strand at 422.292 kb on + strand, within H281DRAFT_03890 at 422.293 kb on - strand, within H281DRAFT_03890 at 422.723 kb on - strand at 422.740 kb on - strand at 422.747 kb on - strand at 422.747 kb on - strand at 422.806 kb on + strand at 422.806 kb on + strand at 422.806 kb on + strand at 422.806 kb on + strand at 423.015 kb on + strand, within H281DRAFT_03891 at 423.015 kb on + strand, within H281DRAFT_03891 at 423.050 kb on - strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.064 kb on - strand, within H281DRAFT_03891 at 423.064 kb on - strand, within H281DRAFT_03891 at 423.064 kb on - strand, within H281DRAFT_03891 at 423.064 kb on - strand, within H281DRAFT_03891 at 423.398 kb on + strand, within H281DRAFT_03892 at 423.398 kb on + strand, within H281DRAFT_03892 at 423.399 kb on - strand, within H281DRAFT_03892 at 423.399 kb on - strand, within H281DRAFT_03892 at 423.440 kb on + strand, within H281DRAFT_03892 at 423.447 kb on - strand, within H281DRAFT_03892 at 423.539 kb on + strand, within H281DRAFT_03892
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 421,339 + H281DRAFT_03889 0.63 -0.1 421,369 + H281DRAFT_03889 0.65 -0.3 421,369 + H281DRAFT_03889 0.65 +0.1 421,668 - H281DRAFT_03889 0.85 -0.1 421,702 + H281DRAFT_03889 0.87 +0.1 421,702 + H281DRAFT_03889 0.87 -0.6 421,702 + H281DRAFT_03889 0.87 +0.2 421,703 - H281DRAFT_03889 0.87 +0.3 421,703 - H281DRAFT_03889 0.87 -1.2 421,703 - H281DRAFT_03889 0.87 +0.2 421,703 - H281DRAFT_03889 0.87 -0.9 421,707 + H281DRAFT_03889 0.87 -0.5 421,708 - H281DRAFT_03889 0.87 +0.2 421,768 + -0.3 421,797 + -1.0 421,797 + -0.3 421,797 + +0.8 421,797 + -2.6 421,797 + -1.2 421,798 - +0.9 421,897 + +1.0 421,898 - -0.9 421,908 + +0.8 421,908 + -0.3 421,908 + +2.8 421,908 + -0.1 421,909 - -0.0 421,909 - +1.6 421,909 - +0.8 421,918 + -1.4 422,030 + -0.0 422,030 + -0.2 422,030 + -1.5 422,067 + -0.7 422,067 + +0.1 422,068 - +0.4 422,292 + H281DRAFT_03890 0.34 -0.8 422,293 - H281DRAFT_03890 0.34 -0.7 422,723 - +0.6 422,740 - +0.1 422,747 - -1.1 422,747 - +0.3 422,806 + -0.1 422,806 + +1.1 422,806 + -1.0 422,806 + +0.2 423,015 + H281DRAFT_03891 0.53 -0.3 423,015 + H281DRAFT_03891 0.53 -0.2 423,050 - H281DRAFT_03891 0.68 +2.2 423,063 + H281DRAFT_03891 0.74 -0.9 423,063 + H281DRAFT_03891 0.74 +0.2 423,063 + H281DRAFT_03891 0.74 +0.6 423,063 + H281DRAFT_03891 0.74 +0.7 423,063 + H281DRAFT_03891 0.74 +1.3 423,063 + H281DRAFT_03891 0.74 -1.2 423,064 - H281DRAFT_03891 0.75 +0.5 423,064 - H281DRAFT_03891 0.75 -0.8 423,064 - H281DRAFT_03891 0.75 -0.8 423,064 - H281DRAFT_03891 0.75 -1.1 423,398 + H281DRAFT_03892 0.34 +0.1 423,398 + H281DRAFT_03892 0.34 -0.8 423,399 - H281DRAFT_03892 0.34 -0.1 423,399 - H281DRAFT_03892 0.34 -0.1 423,440 + H281DRAFT_03892 0.39 -1.4 423,447 - H281DRAFT_03892 0.40 -0.5 423,539 + H281DRAFT_03892 0.51 +0.9
Or see this region's nucleotide sequence