Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03773 and H281DRAFT_03774 are separated by 48 nucleotides H281DRAFT_03774 and H281DRAFT_03775 are separated by 380 nucleotides H281DRAFT_03775 and H281DRAFT_03776 are separated by 47 nucleotides
H281DRAFT_03773: H281DRAFT_03773 - serine/threonine protein kinase, at 289,383 to 291,551
_03773
H281DRAFT_03774: H281DRAFT_03774 - Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain, at 291,600 to 293,600
_03774
H281DRAFT_03775: H281DRAFT_03775 - protein of unknown function (DUF4399), at 293,981 to 294,484
_03775
H281DRAFT_03776: H281DRAFT_03776 - protein of unknown function (DUF4399), at 294,532 to 294,963
_03776
Position (kb) 291
292
293
294 Strain fitness (log2 ratio) -1
0
1 at 291.071 kb on + strand, within H281DRAFT_03773 at 291.222 kb on + strand, within H281DRAFT_03773 at 291.266 kb on + strand, within H281DRAFT_03773 at 291.590 kb on + strand at 292.045 kb on + strand, within H281DRAFT_03774 at 292.251 kb on + strand, within H281DRAFT_03774 at 292.619 kb on - strand, within H281DRAFT_03774 at 292.656 kb on - strand, within H281DRAFT_03774 at 292.690 kb on + strand, within H281DRAFT_03774 at 292.767 kb on + strand, within H281DRAFT_03774 at 292.768 kb on - strand, within H281DRAFT_03774 at 292.997 kb on - strand, within H281DRAFT_03774 at 293.082 kb on + strand, within H281DRAFT_03774 at 293.298 kb on + strand, within H281DRAFT_03774 at 293.433 kb on + strand at 293.661 kb on + strand at 293.694 kb on - strand at 293.879 kb on - strand at 294.053 kb on - strand, within H281DRAFT_03775
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 291,071 + H281DRAFT_03773 0.78 -1.7 291,222 + H281DRAFT_03773 0.85 +1.6 291,266 + H281DRAFT_03773 0.87 +0.5 291,590 + -0.6 292,045 + H281DRAFT_03774 0.22 -0.1 292,251 + H281DRAFT_03774 0.33 -0.4 292,619 - H281DRAFT_03774 0.51 -0.3 292,656 - H281DRAFT_03774 0.53 -1.6 292,690 + H281DRAFT_03774 0.54 +0.1 292,767 + H281DRAFT_03774 0.58 +0.5 292,768 - H281DRAFT_03774 0.58 -0.1 292,997 - H281DRAFT_03774 0.70 +0.2 293,082 + H281DRAFT_03774 0.74 -0.9 293,298 + H281DRAFT_03774 0.85 +1.2 293,433 + -0.6 293,661 + +0.1 293,694 - -0.2 293,879 - +0.1 294,053 - H281DRAFT_03775 0.14 -0.9
Or see this region's nucleotide sequence