Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03586

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03584 and H281DRAFT_03585 are separated by 107 nucleotidesH281DRAFT_03585 and H281DRAFT_03586 are separated by 48 nucleotidesH281DRAFT_03586 and H281DRAFT_03587 are separated by 12 nucleotides H281DRAFT_03584: H281DRAFT_03584 - transcriptional regulator, TetR family, at 92,934 to 93,647 _03584 H281DRAFT_03585: H281DRAFT_03585 - Polyisoprenoid-binding protein YceI, at 93,755 to 94,405 _03585 H281DRAFT_03586: H281DRAFT_03586 - L-threonine 3-dehydrogenase, at 94,454 to 95,485 _03586 H281DRAFT_03587: H281DRAFT_03587 - 2-amino-3-ketobutyrate coenzyme A ligase, at 95,498 to 96,697 _03587 Position (kb) 94 95 96Strain fitness (log2 ratio) -1 0 1 2at 93.492 kb on - strand, within H281DRAFT_03584at 93.492 kb on - strand, within H281DRAFT_03584at 93.492 kb on - strand, within H281DRAFT_03584at 93.493 kb on + strand, within H281DRAFT_03584at 93.494 kb on - strand, within H281DRAFT_03584at 93.503 kb on + strand, within H281DRAFT_03584at 93.552 kb on + strand, within H281DRAFT_03584at 93.553 kb on - strand, within H281DRAFT_03584at 93.553 kb on - strand, within H281DRAFT_03584at 93.565 kb on + strandat 93.565 kb on + strand, within H281DRAFT_03584at 93.635 kb on + strandat 93.719 kb on + strandat 93.719 kb on + strandat 93.749 kb on + strandat 93.947 kb on + strand, within H281DRAFT_03585at 93.948 kb on - strand, within H281DRAFT_03585at 93.958 kb on + strand, within H281DRAFT_03585at 94.300 kb on + strand, within H281DRAFT_03585at 94.455 kb on + strandat 94.525 kb on - strandat 94.599 kb on + strand, within H281DRAFT_03586at 94.600 kb on - strand, within H281DRAFT_03586at 94.627 kb on - strand, within H281DRAFT_03586at 94.627 kb on - strand, within H281DRAFT_03586at 94.627 kb on - strand, within H281DRAFT_03586at 94.627 kb on - strand, within H281DRAFT_03586at 95.115 kb on + strand, within H281DRAFT_03586at 95.141 kb on + strand, within H281DRAFT_03586at 95.162 kb on - strand, within H281DRAFT_03586at 95.162 kb on - strand, within H281DRAFT_03586at 95.292 kb on + strand, within H281DRAFT_03586at 95.293 kb on - strand, within H281DRAFT_03586at 95.356 kb on + strand, within H281DRAFT_03586at 95.485 kb on + strandat 95.612 kb on + strandat 95.640 kb on + strand, within H281DRAFT_03587at 95.641 kb on - strand, within H281DRAFT_03587at 95.798 kb on + strand, within H281DRAFT_03587at 95.799 kb on - strand, within H281DRAFT_03587at 95.799 kb on - strand, within H281DRAFT_03587at 95.799 kb on - strand, within H281DRAFT_03587at 95.826 kb on - strand, within H281DRAFT_03587at 95.886 kb on + strand, within H281DRAFT_03587at 95.940 kb on + strand, within H281DRAFT_03587at 95.940 kb on + strand, within H281DRAFT_03587at 95.941 kb on - strand, within H281DRAFT_03587at 95.941 kb on - strand, within H281DRAFT_03587at 95.941 kb on - strand, within H281DRAFT_03587at 96.240 kb on + strand, within H281DRAFT_03587

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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93,492 - H281DRAFT_03584 0.78 +0.5
93,492 - H281DRAFT_03584 0.78 +0.8
93,492 - H281DRAFT_03584 0.78 +0.6
93,493 + H281DRAFT_03584 0.78 -0.3
93,494 - H281DRAFT_03584 0.78 +0.2
93,503 + H281DRAFT_03584 0.80 -1.1
93,552 + H281DRAFT_03584 0.87 -0.3
93,553 - H281DRAFT_03584 0.87 +1.7
93,553 - H281DRAFT_03584 0.87 -0.2
93,565 + +2.6
93,565 + H281DRAFT_03584 0.88 +0.6
93,635 + -0.7
93,719 + -0.3
93,719 + +0.3
93,749 + -0.1
93,947 + H281DRAFT_03585 0.29 +0.3
93,948 - H281DRAFT_03585 0.30 +0.8
93,958 + H281DRAFT_03585 0.31 +1.0
94,300 + H281DRAFT_03585 0.84 -0.4
94,455 + -0.3
94,525 - -0.9
94,599 + H281DRAFT_03586 0.14 -0.7
94,600 - H281DRAFT_03586 0.14 -0.0
94,627 - H281DRAFT_03586 0.17 +0.5
94,627 - H281DRAFT_03586 0.17 +0.1
94,627 - H281DRAFT_03586 0.17 +0.1
94,627 - H281DRAFT_03586 0.17 +1.3
95,115 + H281DRAFT_03586 0.64 +0.2
95,141 + H281DRAFT_03586 0.67 +1.0
95,162 - H281DRAFT_03586 0.69 +0.7
95,162 - H281DRAFT_03586 0.69 +0.6
95,292 + H281DRAFT_03586 0.81 +0.4
95,293 - H281DRAFT_03586 0.81 +0.1
95,356 + H281DRAFT_03586 0.87 -0.7
95,485 + -0.2
95,612 + -1.0
95,640 + H281DRAFT_03587 0.12 +1.6
95,641 - H281DRAFT_03587 0.12 +0.3
95,798 + H281DRAFT_03587 0.25 -0.7
95,799 - H281DRAFT_03587 0.25 -0.7
95,799 - H281DRAFT_03587 0.25 +0.0
95,799 - H281DRAFT_03587 0.25 -0.1
95,826 - H281DRAFT_03587 0.27 +0.7
95,886 + H281DRAFT_03587 0.32 +0.0
95,940 + H281DRAFT_03587 0.37 -0.2
95,940 + H281DRAFT_03587 0.37 -0.0
95,941 - H281DRAFT_03587 0.37 -0.7
95,941 - H281DRAFT_03587 0.37 -1.1
95,941 - H281DRAFT_03587 0.37 +0.4
96,240 + H281DRAFT_03587 0.62 -0.5

Or see this region's nucleotide sequence