Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03462 and H281DRAFT_03463 are separated by 202 nucleotides H281DRAFT_03463 and H281DRAFT_03464 are separated by 87 nucleotides H281DRAFT_03464 and H281DRAFT_03465 are separated by 108 nucleotides H281DRAFT_03465 and H281DRAFT_03466 are separated by 67 nucleotides
H281DRAFT_03462: H281DRAFT_03462 - membrane protein DedA, SNARE-associated domain, at 546,520 to 548,523
_03462
H281DRAFT_03463: H281DRAFT_03463 - hypothetical protein, at 548,726 to 549,076
_03463
H281DRAFT_03464: H281DRAFT_03464 - Organic hydroperoxide reductase OsmC/OhrA, at 549,164 to 549,640
_03464
H281DRAFT_03465: H281DRAFT_03465 - hypothetical protein, at 549,749 to 550,000
_03465
H281DRAFT_03466: H281DRAFT_03466 - transcriptional regulator, AsnC family, at 550,068 to 550,535
_03466
Position (kb) 549
550 Strain fitness (log2 ratio) -1
0
1
2 at 548.415 kb on + strand at 548.455 kb on + strand at 548.510 kb on + strand at 548.510 kb on + strand at 548.511 kb on - strand at 548.548 kb on + strand at 548.582 kb on - strand at 548.643 kb on + strand at 548.788 kb on + strand, within H281DRAFT_03463 at 549.074 kb on + strand at 549.150 kb on + strand at 549.185 kb on + strand at 549.185 kb on + strand at 549.185 kb on + strand at 549.185 kb on + strand at 549.186 kb on - strand at 549.186 kb on - strand at 549.429 kb on - strand, within H281DRAFT_03464 at 549.575 kb on + strand, within H281DRAFT_03464 at 549.575 kb on + strand, within H281DRAFT_03464 at 549.575 kb on + strand, within H281DRAFT_03464 at 549.575 kb on + strand, within H281DRAFT_03464 at 549.575 kb on + strand, within H281DRAFT_03464 at 549.575 kb on + strand, within H281DRAFT_03464 at 549.575 kb on + strand, within H281DRAFT_03464 at 549.576 kb on - strand, within H281DRAFT_03464 at 549.576 kb on - strand, within H281DRAFT_03464 at 549.576 kb on - strand, within H281DRAFT_03464 at 549.576 kb on - strand, within H281DRAFT_03464 at 549.576 kb on - strand, within H281DRAFT_03464 at 549.577 kb on + strand, within H281DRAFT_03464 at 549.647 kb on + strand at 549.647 kb on + strand at 549.684 kb on + strand at 549.713 kb on - strand at 550.005 kb on + strand at 550.052 kb on + strand at 550.052 kb on + strand at 550.053 kb on - strand at 550.053 kb on - strand at 550.098 kb on + strand at 550.098 kb on + strand at 550.099 kb on - strand at 550.211 kb on + strand, within H281DRAFT_03466 at 550.211 kb on + strand, within H281DRAFT_03466 at 550.211 kb on + strand, within H281DRAFT_03466 at 550.211 kb on + strand, within H281DRAFT_03466 at 550.212 kb on - strand, within H281DRAFT_03466 at 550.212 kb on - strand, within H281DRAFT_03466 at 550.213 kb on + strand, within H281DRAFT_03466 at 550.214 kb on - strand, within H281DRAFT_03466 at 550.335 kb on + strand, within H281DRAFT_03466 at 550.388 kb on - strand, within H281DRAFT_03466 at 550.517 kb on + strand at 550.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 548,415 + +1.0 548,455 + +0.1 548,510 + -0.0 548,510 + +0.3 548,511 - +2.2 548,548 + -0.5 548,582 - -0.0 548,643 + +0.5 548,788 + H281DRAFT_03463 0.18 +0.2 549,074 + -0.8 549,150 + +0.6 549,185 + -0.2 549,185 + +0.8 549,185 + -0.5 549,185 + +0.1 549,186 - -0.6 549,186 - +0.3 549,429 - H281DRAFT_03464 0.56 -0.1 549,575 + H281DRAFT_03464 0.86 +1.0 549,575 + H281DRAFT_03464 0.86 +0.8 549,575 + H281DRAFT_03464 0.86 -0.2 549,575 + H281DRAFT_03464 0.86 +0.7 549,575 + H281DRAFT_03464 0.86 +0.9 549,575 + H281DRAFT_03464 0.86 -1.0 549,575 + H281DRAFT_03464 0.86 -0.1 549,576 - H281DRAFT_03464 0.86 +0.6 549,576 - H281DRAFT_03464 0.86 +0.7 549,576 - H281DRAFT_03464 0.86 -0.0 549,576 - H281DRAFT_03464 0.86 -0.9 549,576 - H281DRAFT_03464 0.86 -1.1 549,577 + H281DRAFT_03464 0.87 -0.1 549,647 + +0.5 549,647 + -0.4 549,684 + -0.7 549,713 - +1.0 550,005 + -0.3 550,052 + -1.1 550,052 + +0.7 550,053 - +1.1 550,053 - +0.4 550,098 + -0.3 550,098 + -0.3 550,099 - +0.2 550,211 + H281DRAFT_03466 0.31 -0.2 550,211 + H281DRAFT_03466 0.31 +1.2 550,211 + H281DRAFT_03466 0.31 +0.9 550,211 + H281DRAFT_03466 0.31 +0.1 550,212 - H281DRAFT_03466 0.31 -0.2 550,212 - H281DRAFT_03466 0.31 -0.3 550,213 + H281DRAFT_03466 0.31 -0.3 550,214 - H281DRAFT_03466 0.31 -0.2 550,335 + H281DRAFT_03466 0.57 -0.2 550,388 - H281DRAFT_03466 0.68 -0.8 550,517 + +0.1 550,517 + +0.2
Or see this region's nucleotide sequence