Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03164 and H281DRAFT_03165 overlap by 4 nucleotides H281DRAFT_03165 and H281DRAFT_03166 overlap by 8 nucleotides H281DRAFT_03166 and H281DRAFT_03167 are separated by 57 nucleotides
H281DRAFT_03164: H281DRAFT_03164 - Uncharacterized conserved protein, at 203,498 to 206,005
_03164
H281DRAFT_03165: H281DRAFT_03165 - Flagellar motor protein MotB, at 206,002 to 206,658
_03165
H281DRAFT_03166: H281DRAFT_03166 - Protein of unknown function (DUF2894), at 206,651 to 207,379
_03166
H281DRAFT_03167: H281DRAFT_03167 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 207,437 to 208,111
_03167
Position (kb) 206
207 Strain fitness (log2 ratio) -1
0
1 at 205.244 kb on - strand, within H281DRAFT_03164 at 205.353 kb on + strand, within H281DRAFT_03164 at 205.353 kb on + strand, within H281DRAFT_03164 at 205.354 kb on - strand, within H281DRAFT_03164 at 205.886 kb on + strand at 205.886 kb on + strand at 205.886 kb on + strand at 205.887 kb on - strand at 205.889 kb on + strand at 206.263 kb on - strand, within H281DRAFT_03165 at 206.362 kb on + strand, within H281DRAFT_03165 at 206.942 kb on + strand, within H281DRAFT_03166 at 207.105 kb on - strand, within H281DRAFT_03166 at 207.249 kb on - strand, within H281DRAFT_03166 at 207.269 kb on + strand, within H281DRAFT_03166 at 207.270 kb on - strand, within H281DRAFT_03166 at 207.405 kb on - strand at 207.405 kb on - strand at 207.405 kb on - strand at 207.494 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 205,244 - H281DRAFT_03164 0.70 +0.5 205,353 + H281DRAFT_03164 0.74 -0.3 205,353 + H281DRAFT_03164 0.74 +0.6 205,354 - H281DRAFT_03164 0.74 -1.4 205,886 + +0.3 205,886 + +0.0 205,886 + +0.2 205,887 - +0.3 205,889 + -0.4 206,263 - H281DRAFT_03165 0.40 +0.4 206,362 + H281DRAFT_03165 0.55 +1.4 206,942 + H281DRAFT_03166 0.40 -0.7 207,105 - H281DRAFT_03166 0.62 +0.2 207,249 - H281DRAFT_03166 0.82 -0.4 207,269 + H281DRAFT_03166 0.85 +0.6 207,270 - H281DRAFT_03166 0.85 +1.2 207,405 - -0.1 207,405 - +0.1 207,405 - -1.4 207,494 + -0.3
Or see this region's nucleotide sequence