Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02607

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02606 and H281DRAFT_02607 are separated by 862 nucleotidesH281DRAFT_02607 and H281DRAFT_02608 are separated by 95 nucleotidesH281DRAFT_02608 and H281DRAFT_02609 overlap by 4 nucleotides H281DRAFT_02606: H281DRAFT_02606 - 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase, at 182,661 to 183,326 _02606 H281DRAFT_02607: H281DRAFT_02607 - protein of unknown function (DUF4148), at 184,189 to 184,497 _02607 H281DRAFT_02608: H281DRAFT_02608 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 184,593 to 185,255 _02608 H281DRAFT_02609: H281DRAFT_02609 - two-component system, OmpR family, sensor kinase, at 185,252 to 186,583 _02609 Position (kb) 184 185Strain fitness (log2 ratio) -1 0 1at 184.056 kb on - strandat 184.137 kb on - strandat 184.519 kb on + strandat 184.666 kb on - strand, within H281DRAFT_02608at 185.325 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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184,056 - -0.8
184,137 - -0.0
184,519 + +0.0
184,666 - H281DRAFT_02608 0.11 +0.7
185,325 - +0.2

Or see this region's nucleotide sequence