Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02601 and H281DRAFT_02602 are separated by 10 nucleotides H281DRAFT_02602 and H281DRAFT_02603 are separated by 233 nucleotides H281DRAFT_02603 and H281DRAFT_02604 are separated by 707 nucleotides
H281DRAFT_02601: H281DRAFT_02601 - two-component system, OmpR family, sensor histidine kinase TctE, at 176,360 to 177,730
_02601
H281DRAFT_02602: H281DRAFT_02602 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 177,741 to 178,415
_02602
H281DRAFT_02603: H281DRAFT_02603 - Outer membrane protein (porin), at 178,649 to 179,776
_02603
H281DRAFT_02604: H281DRAFT_02604 - hypothetical protein, at 180,484 to 180,786
_02604
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.873 kb on + strand, within H281DRAFT_02602 at 178.309 kb on + strand, within H281DRAFT_02602 at 178.661 kb on + strand at 179.023 kb on + strand, within H281DRAFT_02603 at 179.024 kb on - strand, within H281DRAFT_02603 at 179.044 kb on + strand, within H281DRAFT_02603 at 179.282 kb on - strand, within H281DRAFT_02603 at 179.315 kb on - strand, within H281DRAFT_02603 at 179.370 kb on - strand, within H281DRAFT_02603 at 179.371 kb on + strand, within H281DRAFT_02603 at 179.403 kb on - strand, within H281DRAFT_02603 at 179.511 kb on - strand at 179.540 kb on + strand, within H281DRAFT_02603 at 179.642 kb on + strand, within H281DRAFT_02603 at 179.904 kb on + strand at 180.308 kb on + strand at 180.383 kb on - strand at 180.422 kb on - strand at 180.422 kb on - strand at 180.585 kb on - strand, within H281DRAFT_02604
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 177,873 + H281DRAFT_02602 0.20 -0.2 178,309 + H281DRAFT_02602 0.84 -0.0 178,661 + -0.5 179,023 + H281DRAFT_02603 0.33 +0.4 179,024 - H281DRAFT_02603 0.33 -2.3 179,044 + H281DRAFT_02603 0.35 -0.5 179,282 - H281DRAFT_02603 0.56 -0.4 179,315 - H281DRAFT_02603 0.59 +1.2 179,370 - H281DRAFT_02603 0.64 +0.0 179,371 + H281DRAFT_02603 0.64 -0.0 179,403 - H281DRAFT_02603 0.67 +0.3 179,511 - +2.0 179,540 + H281DRAFT_02603 0.79 -0.2 179,642 + H281DRAFT_02603 0.88 +0.7 179,904 + +0.5 180,308 + -2.1 180,383 - +0.5 180,422 - -0.4 180,422 - +0.5 180,585 - H281DRAFT_02604 0.33 +0.3
Or see this region's nucleotide sequence