Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02582 and H281DRAFT_02583 are separated by 544 nucleotides H281DRAFT_02583 and H281DRAFT_02584 overlap by 4 nucleotides H281DRAFT_02584 and H281DRAFT_02585 overlap by 19 nucleotides H281DRAFT_02585 and H281DRAFT_02586 are separated by 127 nucleotides
H281DRAFT_02582: H281DRAFT_02582 - Arabinose efflux permease, at 156,557 to 157,957
_02582
H281DRAFT_02583: H281DRAFT_02583 - DNA-binding protein HU-beta, at 158,502 to 158,729
_02583
H281DRAFT_02584: H281DRAFT_02584 - hypothetical protein, at 158,726 to 158,845
_02584
H281DRAFT_02585: H281DRAFT_02585 - FAD/FMN-containing dehydrogenase, at 158,827 to 160,212
_02585
H281DRAFT_02586: H281DRAFT_02586 - Cytochrome c, mono- and diheme variants, at 160,340 to 161,176
_02586
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 158.262 kb on + strand at 158.344 kb on - strand at 158.344 kb on - strand at 158.475 kb on + strand at 158.804 kb on + strand, within H281DRAFT_02584 at 158.915 kb on + strand at 159.295 kb on + strand, within H281DRAFT_02585 at 159.599 kb on - strand, within H281DRAFT_02585 at 159.652 kb on + strand, within H281DRAFT_02585 at 159.857 kb on - strand, within H281DRAFT_02585 at 159.942 kb on - strand, within H281DRAFT_02585 at 159.942 kb on - strand, within H281DRAFT_02585 at 159.953 kb on - strand at 159.953 kb on - strand, within H281DRAFT_02585 at 159.982 kb on - strand, within H281DRAFT_02585 at 160.050 kb on - strand, within H281DRAFT_02585 at 160.211 kb on - strand at 160.366 kb on + strand at 160.368 kb on + strand at 160.369 kb on - strand at 160.883 kb on + strand, within H281DRAFT_02586 at 160.946 kb on - strand, within H281DRAFT_02586 at 160.993 kb on + strand, within H281DRAFT_02586 at 160.999 kb on - strand, within H281DRAFT_02586 at 161.084 kb on + strand, within H281DRAFT_02586
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 158,262 + -0.7 158,344 - -0.3 158,344 - +1.9 158,475 + -0.1 158,804 + H281DRAFT_02584 0.65 +0.0 158,915 + +0.2 159,295 + H281DRAFT_02585 0.34 -0.7 159,599 - H281DRAFT_02585 0.56 -2.3 159,652 + H281DRAFT_02585 0.60 +0.1 159,857 - H281DRAFT_02585 0.74 -1.7 159,942 - H281DRAFT_02585 0.80 +0.1 159,942 - H281DRAFT_02585 0.80 +0.1 159,953 - +3.2 159,953 - H281DRAFT_02585 0.81 +0.3 159,982 - H281DRAFT_02585 0.83 +0.8 160,050 - H281DRAFT_02585 0.88 +2.2 160,211 - +0.7 160,366 + +1.5 160,368 + -0.2 160,369 - +0.0 160,883 + H281DRAFT_02586 0.65 +0.9 160,946 - H281DRAFT_02586 0.72 -0.9 160,993 + H281DRAFT_02586 0.78 +0.4 160,999 - H281DRAFT_02586 0.79 -0.1 161,084 + H281DRAFT_02586 0.89 -0.2
Or see this region's nucleotide sequence