Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02443 and H281DRAFT_02444 are separated by 6 nucleotides H281DRAFT_02444 and H281DRAFT_02445 are separated by 94 nucleotides H281DRAFT_02445 and H281DRAFT_02446 are separated by 210 nucleotides
H281DRAFT_02443: H281DRAFT_02443 - alkylhydroperoxidase AhpD family core domain-containing protein, at 7,042 to 7,434
_02443
H281DRAFT_02444: H281DRAFT_02444 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 7,441 to 8,130
_02444
H281DRAFT_02445: H281DRAFT_02445 - cytochrome c peroxidase, at 8,225 to 9,676
_02445
H281DRAFT_02446: H281DRAFT_02446 - phospholipase C, at 9,887 to 11,665
_02446
Position (kb) 8
9
10 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 7.252 kb on + strand, within H281DRAFT_02443 at 7.433 kb on - strand at 7.539 kb on + strand, within H281DRAFT_02444 at 7.539 kb on + strand, within H281DRAFT_02444 at 7.627 kb on - strand, within H281DRAFT_02444 at 7.838 kb on - strand, within H281DRAFT_02444 at 8.051 kb on - strand, within H281DRAFT_02444 at 8.168 kb on + strand at 8.168 kb on + strand at 8.275 kb on + strand at 8.351 kb on + strand at 8.352 kb on - strand at 8.352 kb on - strand at 8.481 kb on + strand, within H281DRAFT_02445 at 8.536 kb on + strand, within H281DRAFT_02445 at 8.594 kb on + strand, within H281DRAFT_02445 at 8.820 kb on + strand, within H281DRAFT_02445 at 8.952 kb on + strand, within H281DRAFT_02445 at 8.953 kb on - strand, within H281DRAFT_02445 at 9.234 kb on + strand, within H281DRAFT_02445 at 9.531 kb on + strand at 9.532 kb on - strand at 9.691 kb on + strand at 9.936 kb on + strand at 9.936 kb on + strand at 9.937 kb on - strand at 10.301 kb on - strand, within H281DRAFT_02446 at 10.310 kb on - strand, within H281DRAFT_02446 at 10.311 kb on + strand, within H281DRAFT_02446 at 10.345 kb on - strand, within H281DRAFT_02446 at 10.537 kb on - strand, within H281DRAFT_02446
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 7,252 + H281DRAFT_02443 0.53 +0.2 7,433 - +1.0 7,539 + H281DRAFT_02444 0.14 +0.7 7,539 + H281DRAFT_02444 0.14 -3.5 7,627 - H281DRAFT_02444 0.27 +0.7 7,838 - H281DRAFT_02444 0.58 -0.5 8,051 - H281DRAFT_02444 0.88 +1.5 8,168 + -0.3 8,168 + +1.0 8,275 + -0.9 8,351 + +0.1 8,352 - -0.1 8,352 - -0.2 8,481 + H281DRAFT_02445 0.18 -0.6 8,536 + H281DRAFT_02445 0.21 +0.6 8,594 + H281DRAFT_02445 0.25 +0.0 8,820 + H281DRAFT_02445 0.41 -0.5 8,952 + H281DRAFT_02445 0.50 -0.4 8,953 - H281DRAFT_02445 0.50 -0.6 9,234 + H281DRAFT_02445 0.69 -1.6 9,531 + +1.9 9,532 - -1.6 9,691 + +0.1 9,936 + -0.6 9,936 + -0.1 9,937 - -2.7 10,301 - H281DRAFT_02446 0.23 -0.8 10,310 - H281DRAFT_02446 0.24 +0.6 10,311 + H281DRAFT_02446 0.24 -0.4 10,345 - H281DRAFT_02446 0.26 -0.6 10,537 - H281DRAFT_02446 0.37 -0.3
Or see this region's nucleotide sequence