Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02179

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02178 and H281DRAFT_02179 are separated by 10 nucleotidesH281DRAFT_02179 and H281DRAFT_02180 are separated by 194 nucleotides H281DRAFT_02178: H281DRAFT_02178 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 320,034 to 320,894 _02178 H281DRAFT_02179: H281DRAFT_02179 - two component transcriptional regulator, LuxR family, at 320,905 to 321,561 _02179 H281DRAFT_02180: H281DRAFT_02180 - amino acid/polyamine/organocation transporter, APC superfamily, at 321,756 to 323,147 _02180 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 319.951 kb on - strandat 319.962 kb on - strandat 320.039 kb on + strandat 320.039 kb on + strandat 320.040 kb on - strandat 320.040 kb on - strandat 320.040 kb on - strandat 320.040 kb on - strandat 320.059 kb on + strandat 320.606 kb on - strand, within H281DRAFT_02178at 320.606 kb on - strand, within H281DRAFT_02178at 320.641 kb on + strand, within H281DRAFT_02178at 320.790 kb on - strand, within H281DRAFT_02178at 320.790 kb on - strand, within H281DRAFT_02178at 320.790 kb on - strand, within H281DRAFT_02178at 320.966 kb on + strandat 320.966 kb on + strandat 320.967 kb on - strandat 321.049 kb on + strand, within H281DRAFT_02179at 321.049 kb on + strand, within H281DRAFT_02179at 321.050 kb on - strand, within H281DRAFT_02179at 321.050 kb on - strandat 321.101 kb on + strand, within H281DRAFT_02179at 321.101 kb on + strand, within H281DRAFT_02179at 321.102 kb on - strand, within H281DRAFT_02179at 321.157 kb on + strand, within H281DRAFT_02179at 321.158 kb on - strand, within H281DRAFT_02179at 321.172 kb on + strand, within H281DRAFT_02179at 321.172 kb on + strand, within H281DRAFT_02179at 321.173 kb on - strand, within H281DRAFT_02179at 321.277 kb on + strand, within H281DRAFT_02179at 321.277 kb on + strand, within H281DRAFT_02179at 321.277 kb on + strand, within H281DRAFT_02179at 321.277 kb on + strand, within H281DRAFT_02179at 321.277 kb on + strand, within H281DRAFT_02179at 321.277 kb on + strand, within H281DRAFT_02179at 321.277 kb on + strand, within H281DRAFT_02179at 321.278 kb on - strand, within H281DRAFT_02179at 321.278 kb on - strand, within H281DRAFT_02179at 321.278 kb on - strand, within H281DRAFT_02179at 321.313 kb on + strand, within H281DRAFT_02179at 321.313 kb on + strand, within H281DRAFT_02179at 321.313 kb on + strand, within H281DRAFT_02179at 321.313 kb on + strand, within H281DRAFT_02179at 321.314 kb on - strand, within H281DRAFT_02179at 321.368 kb on - strand, within H281DRAFT_02179at 321.454 kb on + strand, within H281DRAFT_02179at 321.512 kb on - strandat 321.512 kb on - strandat 321.512 kb on - strandat 321.630 kb on + strandat 321.630 kb on + strandat 321.631 kb on - strandat 321.654 kb on + strandat 321.739 kb on - strandat 321.984 kb on + strand, within H281DRAFT_02180at 321.984 kb on + strand, within H281DRAFT_02180at 321.985 kb on - strand, within H281DRAFT_02180at 321.985 kb on - strand, within H281DRAFT_02180at 322.022 kb on + strandat 322.022 kb on + strand, within H281DRAFT_02180at 322.022 kb on + strand, within H281DRAFT_02180at 322.022 kb on + strand, within H281DRAFT_02180at 322.023 kb on - strand, within H281DRAFT_02180at 322.026 kb on + strand, within H281DRAFT_02180at 322.026 kb on + strand, within H281DRAFT_02180at 322.026 kb on + strand, within H281DRAFT_02180at 322.026 kb on + strand, within H281DRAFT_02180at 322.026 kb on + strand, within H281DRAFT_02180at 322.026 kb on + strand, within H281DRAFT_02180at 322.026 kb on + strand, within H281DRAFT_02180at 322.026 kb on + strand, within H281DRAFT_02180at 322.026 kb on + strand, within H281DRAFT_02180at 322.026 kb on + strand, within H281DRAFT_02180at 322.027 kb on - strand, within H281DRAFT_02180at 322.027 kb on - strand, within H281DRAFT_02180at 322.027 kb on - strand, within H281DRAFT_02180at 322.032 kb on + strand, within H281DRAFT_02180at 322.033 kb on - strand, within H281DRAFT_02180at 322.096 kb on - strand, within H281DRAFT_02180at 322.363 kb on + strand, within H281DRAFT_02180at 322.364 kb on - strand, within H281DRAFT_02180at 322.364 kb on - strand, within H281DRAFT_02180at 322.557 kb on + strand, within H281DRAFT_02180at 322.558 kb on - strand, within H281DRAFT_02180at 322.558 kb on - strand, within H281DRAFT_02180at 322.558 kb on - strandat 322.558 kb on - strand, within H281DRAFT_02180

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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319,951 - +1.1
319,962 - +0.9
320,039 + +1.1
320,039 + +0.8
320,040 - +0.5
320,040 - +0.7
320,040 - +1.1
320,040 - +1.2
320,059 + +1.0
320,606 - H281DRAFT_02178 0.66 +0.3
320,606 - H281DRAFT_02178 0.66 +1.7
320,641 + H281DRAFT_02178 0.70 +1.6
320,790 - H281DRAFT_02178 0.88 +0.8
320,790 - H281DRAFT_02178 0.88 +0.8
320,790 - H281DRAFT_02178 0.88 +0.3
320,966 + +3.9
320,966 + +0.4
320,967 - +1.0
321,049 + H281DRAFT_02179 0.22 +1.1
321,049 + H281DRAFT_02179 0.22 +1.3
321,050 - H281DRAFT_02179 0.22 -0.3
321,050 - +2.7
321,101 + H281DRAFT_02179 0.30 +0.8
321,101 + H281DRAFT_02179 0.30 +1.2
321,102 - H281DRAFT_02179 0.30 +0.7
321,157 + H281DRAFT_02179 0.38 +0.8
321,158 - H281DRAFT_02179 0.39 +1.4
321,172 + H281DRAFT_02179 0.41 +1.2
321,172 + H281DRAFT_02179 0.41 +1.5
321,173 - H281DRAFT_02179 0.41 +0.8
321,277 + H281DRAFT_02179 0.57 +1.2
321,277 + H281DRAFT_02179 0.57 +0.3
321,277 + H281DRAFT_02179 0.57 +0.4
321,277 + H281DRAFT_02179 0.57 +0.5
321,277 + H281DRAFT_02179 0.57 +0.8
321,277 + H281DRAFT_02179 0.57 -0.0
321,277 + H281DRAFT_02179 0.57 +0.3
321,278 - H281DRAFT_02179 0.57 +0.3
321,278 - H281DRAFT_02179 0.57 +0.9
321,278 - H281DRAFT_02179 0.57 +0.3
321,313 + H281DRAFT_02179 0.62 +0.8
321,313 + H281DRAFT_02179 0.62 +1.0
321,313 + H281DRAFT_02179 0.62 -0.3
321,313 + H281DRAFT_02179 0.62 +1.5
321,314 - H281DRAFT_02179 0.62 +1.5
321,368 - H281DRAFT_02179 0.70 +0.4
321,454 + H281DRAFT_02179 0.84 +0.9
321,512 - +0.3
321,512 - +1.4
321,512 - +1.1
321,630 + -0.2
321,630 + -0.2
321,631 - +0.0
321,654 + -0.3
321,739 - +0.1
321,984 + H281DRAFT_02180 0.16 +0.0
321,984 + H281DRAFT_02180 0.16 -0.7
321,985 - H281DRAFT_02180 0.16 -0.0
321,985 - H281DRAFT_02180 0.16 +0.0
322,022 + +2.1
322,022 + H281DRAFT_02180 0.19 +0.8
322,022 + H281DRAFT_02180 0.19 -1.7
322,022 + H281DRAFT_02180 0.19 +0.6
322,023 - H281DRAFT_02180 0.19 -0.5
322,026 + H281DRAFT_02180 0.19 -0.6
322,026 + H281DRAFT_02180 0.19 +0.1
322,026 + H281DRAFT_02180 0.19 +0.1
322,026 + H281DRAFT_02180 0.19 +0.2
322,026 + H281DRAFT_02180 0.19 -0.0
322,026 + H281DRAFT_02180 0.19 -0.2
322,026 + H281DRAFT_02180 0.19 -0.6
322,026 + H281DRAFT_02180 0.19 -0.3
322,026 + H281DRAFT_02180 0.19 +0.7
322,026 + H281DRAFT_02180 0.19 -0.1
322,027 - H281DRAFT_02180 0.19 -1.6
322,027 - H281DRAFT_02180 0.19 -0.6
322,027 - H281DRAFT_02180 0.19 -1.1
322,032 + H281DRAFT_02180 0.20 -0.3
322,033 - H281DRAFT_02180 0.20 +0.4
322,096 - H281DRAFT_02180 0.24 -0.9
322,363 + H281DRAFT_02180 0.44 -0.6
322,364 - H281DRAFT_02180 0.44 -2.0
322,364 - H281DRAFT_02180 0.44 +0.7
322,557 + H281DRAFT_02180 0.58 +0.4
322,558 - H281DRAFT_02180 0.58 -0.0
322,558 - H281DRAFT_02180 0.58 +0.3
322,558 - +1.1
322,558 - H281DRAFT_02180 0.58 -0.8

Or see this region's nucleotide sequence