Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02168 and H281DRAFT_02169 are separated by 303 nucleotides H281DRAFT_02169 and H281DRAFT_02170 are separated by 109 nucleotides H281DRAFT_02170 and H281DRAFT_02171 are separated by 86 nucleotides
H281DRAFT_02168: H281DRAFT_02168 - ATP-dependent Lon protease, at 308,048 to 309,013
_02168
H281DRAFT_02169: H281DRAFT_02169 - hypothetical protein, at 309,317 to 309,874
_02169
H281DRAFT_02170: H281DRAFT_02170 - Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family, at 309,984 to 310,781
_02170
H281DRAFT_02171: H281DRAFT_02171 - aldose 1-epimerase, at 310,868 to 311,851
_02171
Position (kb) 309
310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.141 kb on + strand at 309.142 kb on - strand at 309.232 kb on - strand at 309.265 kb on + strand at 309.265 kb on + strand at 309.265 kb on + strand at 309.266 kb on - strand at 309.266 kb on - strand at 309.316 kb on + strand at 309.417 kb on + strand, within H281DRAFT_02169 at 309.508 kb on + strand, within H281DRAFT_02169 at 309.509 kb on - strand, within H281DRAFT_02169 at 309.865 kb on + strand at 309.866 kb on - strand at 309.944 kb on + strand at 309.945 kb on - strand at 309.945 kb on - strand at 310.134 kb on + strand, within H281DRAFT_02170 at 310.553 kb on + strand, within H281DRAFT_02170 at 310.554 kb on - strand, within H281DRAFT_02170 at 310.755 kb on + strand at 310.755 kb on + strand at 310.755 kb on + strand at 310.755 kb on + strand at 310.755 kb on + strand at 310.755 kb on + strand at 310.756 kb on - strand at 310.756 kb on - strand at 310.869 kb on + strand at 310.870 kb on - strand at 310.870 kb on - strand at 310.870 kb on - strand at 310.870 kb on - strand at 310.870 kb on - strand at 311.000 kb on + strand, within H281DRAFT_02171 at 311.000 kb on + strand, within H281DRAFT_02171 at 311.001 kb on - strand, within H281DRAFT_02171 at 311.001 kb on - strand, within H281DRAFT_02171 at 311.001 kb on - strand, within H281DRAFT_02171 at 311.001 kb on - strand, within H281DRAFT_02171 at 311.035 kb on + strand, within H281DRAFT_02171 at 311.035 kb on + strand, within H281DRAFT_02171 at 311.035 kb on + strand, within H281DRAFT_02171 at 311.036 kb on - strand, within H281DRAFT_02171 at 311.036 kb on - strand, within H281DRAFT_02171 at 311.036 kb on - strand, within H281DRAFT_02171 at 311.036 kb on - strand, within H281DRAFT_02171 at 311.250 kb on + strand, within H281DRAFT_02171 at 311.251 kb on - strand, within H281DRAFT_02171 at 311.280 kb on + strand, within H281DRAFT_02171 at 311.280 kb on + strand, within H281DRAFT_02171 at 311.281 kb on - strand, within H281DRAFT_02171 at 311.411 kb on - strand, within H281DRAFT_02171 at 311.547 kb on - strand, within H281DRAFT_02171 at 311.547 kb on - strand, within H281DRAFT_02171 at 311.592 kb on + strand, within H281DRAFT_02171 at 311.697 kb on + strand, within H281DRAFT_02171
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 309,141 + -0.0 309,142 - +0.5 309,232 - -0.0 309,265 + +2.4 309,265 + -2.6 309,265 + -1.2 309,266 - -1.0 309,266 - +0.4 309,316 + -0.6 309,417 + H281DRAFT_02169 0.18 -0.4 309,508 + H281DRAFT_02169 0.34 -0.1 309,509 - H281DRAFT_02169 0.34 -0.1 309,865 + -0.6 309,866 - +0.9 309,944 + -0.2 309,945 - +0.1 309,945 - +0.0 310,134 + H281DRAFT_02170 0.19 -1.1 310,553 + H281DRAFT_02170 0.71 +0.3 310,554 - H281DRAFT_02170 0.71 -1.3 310,755 + -0.3 310,755 + -0.1 310,755 + -0.7 310,755 + -0.1 310,755 + +0.0 310,755 + -3.5 310,756 - -1.0 310,756 - -0.8 310,869 + +0.6 310,870 - +0.2 310,870 - +0.1 310,870 - +0.3 310,870 - +0.3 310,870 - +2.3 311,000 + H281DRAFT_02171 0.13 +0.5 311,000 + H281DRAFT_02171 0.13 +1.7 311,001 - H281DRAFT_02171 0.14 +0.3 311,001 - H281DRAFT_02171 0.14 +1.6 311,001 - H281DRAFT_02171 0.14 +0.2 311,001 - H281DRAFT_02171 0.14 +0.1 311,035 + H281DRAFT_02171 0.17 -1.0 311,035 + H281DRAFT_02171 0.17 -0.3 311,035 + H281DRAFT_02171 0.17 +1.6 311,036 - H281DRAFT_02171 0.17 +0.1 311,036 - H281DRAFT_02171 0.17 +2.1 311,036 - H281DRAFT_02171 0.17 -0.2 311,036 - H281DRAFT_02171 0.17 -0.1 311,250 + H281DRAFT_02171 0.39 -0.4 311,251 - H281DRAFT_02171 0.39 -0.7 311,280 + H281DRAFT_02171 0.42 +0.8 311,280 + H281DRAFT_02171 0.42 +0.2 311,281 - H281DRAFT_02171 0.42 +0.4 311,411 - H281DRAFT_02171 0.55 +0.5 311,547 - H281DRAFT_02171 0.69 +0.4 311,547 - H281DRAFT_02171 0.69 -0.2 311,592 + H281DRAFT_02171 0.74 -0.6 311,697 + H281DRAFT_02171 0.84 -0.3
Or see this region's nucleotide sequence