Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01605 and H281DRAFT_01606 are separated by 139 nucleotides H281DRAFT_01606 and H281DRAFT_01607 are separated by 212 nucleotides H281DRAFT_01607 and H281DRAFT_01608 are separated by 99 nucleotides
H281DRAFT_01605: H281DRAFT_01605 - polyphosphate kinase 2, PA0141 family, at 485,226 to 486,152
_01605
H281DRAFT_01606: H281DRAFT_01606 - Uncharacterized conserved protein PhnB, glyoxalase superfamily, at 486,292 to 486,726
_01606
H281DRAFT_01607: H281DRAFT_01607 - serine protease, S1-C subfamily, contains C-terminal PDZ domain, at 486,939 to 487,979
_01607
H281DRAFT_01608: H281DRAFT_01608 - gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03, at 488,079 to 489,812
_01608
Position (kb) 486
487
488 Strain fitness (log2 ratio) -1
0
1 at 486.071 kb on - strand at 486.259 kb on + strand at 486.419 kb on + strand, within H281DRAFT_01606 at 486.420 kb on - strand, within H281DRAFT_01606 at 486.444 kb on - strand, within H281DRAFT_01606 at 486.503 kb on + strand, within H281DRAFT_01606 at 486.503 kb on + strand, within H281DRAFT_01606 at 486.503 kb on + strand, within H281DRAFT_01606 at 486.504 kb on - strand, within H281DRAFT_01606 at 486.529 kb on - strand, within H281DRAFT_01606 at 486.529 kb on - strand, within H281DRAFT_01606 at 486.578 kb on + strand, within H281DRAFT_01606 at 486.579 kb on - strand, within H281DRAFT_01606 at 486.579 kb on - strand, within H281DRAFT_01606 at 487.205 kb on + strand, within H281DRAFT_01607 at 487.684 kb on - strand at 487.684 kb on - strand, within H281DRAFT_01607 at 487.686 kb on - strand, within H281DRAFT_01607 at 488.080 kb on + strand at 488.081 kb on - strand at 488.192 kb on + strand at 488.193 kb on - strand at 488.195 kb on - strand at 488.332 kb on + strand, within H281DRAFT_01608 at 488.333 kb on - strand, within H281DRAFT_01608 at 488.591 kb on - strand, within H281DRAFT_01608 at 488.606 kb on - strand, within H281DRAFT_01608 at 488.624 kb on + strand, within H281DRAFT_01608 at 488.812 kb on + strand, within H281DRAFT_01608 at 488.813 kb on - strand, within H281DRAFT_01608 at 488.813 kb on - strand, within H281DRAFT_01608 at 488.866 kb on + strand, within H281DRAFT_01608 at 488.867 kb on - strand, within H281DRAFT_01608
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 486,071 - +0.3 486,259 + +0.1 486,419 + H281DRAFT_01606 0.29 +0.2 486,420 - H281DRAFT_01606 0.29 -0.1 486,444 - H281DRAFT_01606 0.35 +0.3 486,503 + H281DRAFT_01606 0.49 -1.1 486,503 + H281DRAFT_01606 0.49 +1.5 486,503 + H281DRAFT_01606 0.49 -0.3 486,504 - H281DRAFT_01606 0.49 +0.5 486,529 - H281DRAFT_01606 0.54 +0.7 486,529 - H281DRAFT_01606 0.54 +0.3 486,578 + H281DRAFT_01606 0.66 +0.5 486,579 - H281DRAFT_01606 0.66 +0.6 486,579 - H281DRAFT_01606 0.66 -0.1 487,205 + H281DRAFT_01607 0.26 -0.3 487,684 - +0.6 487,684 - H281DRAFT_01607 0.72 +0.1 487,686 - H281DRAFT_01607 0.72 -0.9 488,080 + +0.9 488,081 - +0.6 488,192 + -0.5 488,193 - +0.1 488,195 - -0.5 488,332 + H281DRAFT_01608 0.15 +0.2 488,333 - H281DRAFT_01608 0.15 +0.5 488,591 - H281DRAFT_01608 0.30 +0.1 488,606 - H281DRAFT_01608 0.30 -0.0 488,624 + H281DRAFT_01608 0.31 -0.6 488,812 + H281DRAFT_01608 0.42 -0.6 488,813 - H281DRAFT_01608 0.42 -0.3 488,813 - H281DRAFT_01608 0.42 +1.4 488,866 + H281DRAFT_01608 0.45 +0.8 488,867 - H281DRAFT_01608 0.45 -0.4
Or see this region's nucleotide sequence