Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01241 and H281DRAFT_01242 are separated by 255 nucleotides H281DRAFT_01242 and H281DRAFT_01243 are separated by 57 nucleotides H281DRAFT_01243 and H281DRAFT_01244 overlap by 4 nucleotides
H281DRAFT_01241: H281DRAFT_01241 - mandelamide amidase, at 77,395 to 78,849
_01241
H281DRAFT_01242: H281DRAFT_01242 - CDP-diacylglycerol pyrophosphatase, at 79,105 to 79,746
_01242
H281DRAFT_01243: H281DRAFT_01243 - lipoprotein, YaeC family, at 79,804 to 80,616
_01243
H281DRAFT_01244: H281DRAFT_01244 - Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain, at 80,613 to 81,662
_01244
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2 at 78.818 kb on + strand at 78.875 kb on + strand at 79.213 kb on + strand, within H281DRAFT_01242 at 79.213 kb on + strand, within H281DRAFT_01242 at 79.744 kb on + strand at 79.940 kb on + strand, within H281DRAFT_01243 at 80.303 kb on + strand, within H281DRAFT_01243 at 80.595 kb on + strand at 80.652 kb on - strand at 80.896 kb on + strand, within H281DRAFT_01244 at 81.372 kb on - strand, within H281DRAFT_01244
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 78,818 + +0.1 78,875 + -0.5 79,213 + H281DRAFT_01242 0.17 +1.0 79,213 + H281DRAFT_01242 0.17 +2.1 79,744 + +0.6 79,940 + H281DRAFT_01243 0.17 +0.9 80,303 + H281DRAFT_01243 0.61 +0.8 80,595 + +0.1 80,652 - +0.4 80,896 + H281DRAFT_01244 0.27 -2.0 81,372 - H281DRAFT_01244 0.72 -0.4
Or see this region's nucleotide sequence