Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00885 and H281DRAFT_00886 are separated by 47 nucleotides
H281DRAFT_00885: H281DRAFT_00885 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 980,544 to 981,893
_00885
H281DRAFT_00886: H281DRAFT_00886 - two component transcriptional regulator, winged helix family, at 981,941 to 982,675
_00886
Position (kb) 981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 981.356 kb on + strand, within H281DRAFT_00885 at 981.357 kb on - strand, within H281DRAFT_00885 at 981.464 kb on - strand, within H281DRAFT_00885 at 981.604 kb on + strand, within H281DRAFT_00885 at 981.604 kb on + strand, within H281DRAFT_00885 at 981.604 kb on + strand, within H281DRAFT_00885 at 981.604 kb on + strand, within H281DRAFT_00885 at 981.605 kb on - strand, within H281DRAFT_00885 at 981.605 kb on - strand, within H281DRAFT_00885 at 981.695 kb on - strand, within H281DRAFT_00885 at 981.908 kb on - strand at 981.908 kb on - strand at 981.908 kb on - strand at 981.970 kb on - strand at 981.970 kb on - strand at 982.077 kb on + strand, within H281DRAFT_00886 at 982.356 kb on + strand, within H281DRAFT_00886 at 982.356 kb on + strand at 982.357 kb on - strand, within H281DRAFT_00886 at 982.566 kb on + strand, within H281DRAFT_00886 at 982.566 kb on + strand, within H281DRAFT_00886 at 982.567 kb on - strand, within H281DRAFT_00886 at 982.567 kb on - strand, within H281DRAFT_00886 at 982.594 kb on - strand, within H281DRAFT_00886 at 982.678 kb on + strand at 982.678 kb on + strand at 982.715 kb on - strand at 982.723 kb on - strand at 982.777 kb on + strand at 982.861 kb on + strand at 982.862 kb on - strand at 983.159 kb on + strand at 983.160 kb on - strand at 983.195 kb on + strand at 983.294 kb on + strand at 983.295 kb on - strand at 983.388 kb on + strand at 983.427 kb on + strand at 983.435 kb on + strand at 983.565 kb on + strand at 983.565 kb on + strand at 983.574 kb on + strand at 983.574 kb on + strand at 983.574 kb on + strand at 983.582 kb on + strand at 983.582 kb on + strand at 983.582 kb on + strand at 983.583 kb on - strand at 983.583 kb on - strand at 983.604 kb on + strand at 983.605 kb on - strand at 983.632 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 981,356 + H281DRAFT_00885 0.60 +1.2 981,357 - H281DRAFT_00885 0.60 +1.2 981,464 - H281DRAFT_00885 0.68 +1.6 981,604 + H281DRAFT_00885 0.79 -0.8 981,604 + H281DRAFT_00885 0.79 +1.3 981,604 + H281DRAFT_00885 0.79 +0.7 981,604 + H281DRAFT_00885 0.79 +0.7 981,605 - H281DRAFT_00885 0.79 +3.3 981,605 - H281DRAFT_00885 0.79 +2.2 981,695 - H281DRAFT_00885 0.85 +0.4 981,908 - +0.3 981,908 - -1.3 981,908 - -0.4 981,970 - -0.7 981,970 - +0.5 982,077 + H281DRAFT_00886 0.19 -1.9 982,356 + H281DRAFT_00886 0.56 -1.3 982,356 + +0.7 982,357 - H281DRAFT_00886 0.57 -0.3 982,566 + H281DRAFT_00886 0.85 -1.7 982,566 + H281DRAFT_00886 0.85 -3.5 982,567 - H281DRAFT_00886 0.85 -1.2 982,567 - H281DRAFT_00886 0.85 -0.2 982,594 - H281DRAFT_00886 0.89 -0.7 982,678 + -1.1 982,678 + -2.6 982,715 - +0.2 982,723 - -0.3 982,777 + -0.5 982,861 + +0.9 982,862 - +1.7 983,159 + -1.2 983,160 - +1.1 983,195 + -0.3 983,294 + +0.3 983,295 - +0.7 983,388 + +0.3 983,427 + -0.4 983,435 + -0.1 983,565 + +0.6 983,565 + -0.9 983,574 + -0.3 983,574 + +0.2 983,574 + -0.1 983,582 + -0.4 983,582 + -0.9 983,582 + +0.6 983,583 - +1.8 983,583 - +1.1 983,604 + +0.4 983,605 - +0.5 983,632 + +0.1
Or see this region's nucleotide sequence