Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00849 and H281DRAFT_00850 are separated by 518 nucleotides H281DRAFT_00850 and H281DRAFT_00851 are separated by 49 nucleotides
H281DRAFT_00849: H281DRAFT_00849 - conserved hypothetical protein, at 938,760 to 939,620
_00849
H281DRAFT_00850: H281DRAFT_00850 - hypothetical protein, at 940,139 to 940,306
_00850
H281DRAFT_00851: H281DRAFT_00851 - polyhydroxyalkanoate synthase, at 940,356 to 942,116
_00851
Position (kb) 940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 939.294 kb on + strand, within H281DRAFT_00849 at 939.295 kb on - strand, within H281DRAFT_00849 at 939.331 kb on + strand, within H281DRAFT_00849 at 939.537 kb on + strand at 939.537 kb on + strand at 939.543 kb on + strand at 939.544 kb on - strand at 939.662 kb on + strand at 939.663 kb on - strand at 939.663 kb on - strand at 939.663 kb on - strand at 939.727 kb on + strand at 939.728 kb on - strand at 939.735 kb on + strand at 939.736 kb on - strand at 939.736 kb on - strand at 939.736 kb on - strand at 939.736 kb on - strand at 939.764 kb on + strand at 939.765 kb on - strand at 939.839 kb on + strand at 939.840 kb on - strand at 939.840 kb on - strand at 939.849 kb on + strand at 939.850 kb on - strand at 939.925 kb on + strand at 939.925 kb on + strand at 939.939 kb on + strand at 940.030 kb on + strand at 940.127 kb on + strand at 940.128 kb on - strand at 940.502 kb on + strand at 940.502 kb on + strand at 940.502 kb on + strand at 940.503 kb on - strand at 940.503 kb on - strand at 940.554 kb on + strand, within H281DRAFT_00851 at 940.555 kb on - strand, within H281DRAFT_00851 at 940.692 kb on + strand, within H281DRAFT_00851 at 940.693 kb on - strand, within H281DRAFT_00851 at 941.016 kb on + strand, within H281DRAFT_00851 at 941.017 kb on - strand, within H281DRAFT_00851 at 941.017 kb on - strand, within H281DRAFT_00851 at 941.039 kb on - strand, within H281DRAFT_00851 at 941.039 kb on - strand, within H281DRAFT_00851 at 941.082 kb on + strand, within H281DRAFT_00851 at 941.083 kb on - strand, within H281DRAFT_00851 at 941.083 kb on - strand, within H281DRAFT_00851 at 941.083 kb on - strand, within H281DRAFT_00851 at 941.083 kb on - strand, within H281DRAFT_00851 at 941.083 kb on - strand, within H281DRAFT_00851 at 941.085 kb on + strand, within H281DRAFT_00851 at 941.085 kb on + strand, within H281DRAFT_00851 at 941.086 kb on - strand, within H281DRAFT_00851 at 941.169 kb on - strand, within H281DRAFT_00851 at 941.192 kb on + strand, within H281DRAFT_00851 at 941.193 kb on - strand, within H281DRAFT_00851 at 941.293 kb on + strand, within H281DRAFT_00851
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 939,294 + H281DRAFT_00849 0.62 +0.8 939,295 - H281DRAFT_00849 0.62 -0.0 939,331 + H281DRAFT_00849 0.66 -0.4 939,537 + -0.5 939,537 + -0.8 939,543 + +0.5 939,544 - -0.1 939,662 + +0.5 939,663 - -0.2 939,663 - +0.7 939,663 - +0.3 939,727 + -1.0 939,728 - +0.1 939,735 + -0.3 939,736 - +1.2 939,736 - +1.1 939,736 - -0.4 939,736 - +0.0 939,764 + +0.8 939,765 - +0.7 939,839 + -0.7 939,840 - -1.7 939,840 - -0.2 939,849 + +0.1 939,850 - -0.0 939,925 + +0.3 939,925 + +0.3 939,939 + -0.4 940,030 + -0.8 940,127 + -1.0 940,128 - +0.7 940,502 + +0.9 940,502 + -0.2 940,502 + -0.3 940,503 - +1.8 940,503 - +1.4 940,554 + H281DRAFT_00851 0.11 +0.1 940,555 - H281DRAFT_00851 0.11 -0.2 940,692 + H281DRAFT_00851 0.19 +0.2 940,693 - H281DRAFT_00851 0.19 +1.6 941,016 + H281DRAFT_00851 0.37 -0.3 941,017 - H281DRAFT_00851 0.38 -0.4 941,017 - H281DRAFT_00851 0.38 -0.5 941,039 - H281DRAFT_00851 0.39 +0.7 941,039 - H281DRAFT_00851 0.39 -1.6 941,082 + H281DRAFT_00851 0.41 -3.0 941,083 - H281DRAFT_00851 0.41 +0.3 941,083 - H281DRAFT_00851 0.41 +0.7 941,083 - H281DRAFT_00851 0.41 +0.5 941,083 - H281DRAFT_00851 0.41 +0.7 941,083 - H281DRAFT_00851 0.41 -0.4 941,085 + H281DRAFT_00851 0.41 -0.8 941,085 + H281DRAFT_00851 0.41 -2.5 941,086 - H281DRAFT_00851 0.41 -0.5 941,169 - H281DRAFT_00851 0.46 +0.8 941,192 + H281DRAFT_00851 0.47 -0.8 941,193 - H281DRAFT_00851 0.48 -0.6 941,293 + H281DRAFT_00851 0.53 -2.2
Or see this region's nucleotide sequence