Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00699

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00698 and H281DRAFT_00699 are separated by 543 nucleotidesH281DRAFT_00699 and H281DRAFT_00700 overlap by 4 nucleotides H281DRAFT_00698: H281DRAFT_00698 - transcriptional regulator, TetR family, at 780,174 to 780,929 _00698 H281DRAFT_00699: H281DRAFT_00699 - RND family efflux transporter, MFP subunit, at 781,473 to 782,552 _00699 H281DRAFT_00700: H281DRAFT_00700 - Multidrug efflux pump subunit AcrB, at 782,549 to 785,740 _00700 Position (kb) 781 782 783Strain fitness (log2 ratio) -1 0 1at 780.567 kb on - strand, within H281DRAFT_00698at 781.045 kb on - strandat 781.147 kb on - strandat 781.603 kb on + strand, within H281DRAFT_00699at 781.872 kb on + strand, within H281DRAFT_00699at 782.029 kb on - strand, within H281DRAFT_00699at 782.426 kb on + strand, within H281DRAFT_00699at 782.426 kb on + strand, within H281DRAFT_00699at 782.426 kb on + strand, within H281DRAFT_00699at 782.427 kb on - strand, within H281DRAFT_00699at 782.855 kb on + strandat 782.954 kb on + strand, within H281DRAFT_00700at 783.004 kb on + strand, within H281DRAFT_00700at 783.265 kb on + strand, within H281DRAFT_00700

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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780,567 - H281DRAFT_00698 0.52 +0.5
781,045 - +0.2
781,147 - -0.2
781,603 + H281DRAFT_00699 0.12 +0.8
781,872 + H281DRAFT_00699 0.37 -0.8
782,029 - H281DRAFT_00699 0.51 +1.3
782,426 + H281DRAFT_00699 0.88 -0.3
782,426 + H281DRAFT_00699 0.88 -0.8
782,426 + H281DRAFT_00699 0.88 -0.6
782,427 - H281DRAFT_00699 0.88 +0.9
782,855 + -0.6
782,954 + H281DRAFT_00700 0.13 +0.5
783,004 + H281DRAFT_00700 0.14 -1.4
783,265 + H281DRAFT_00700 0.22 -0.1

Or see this region's nucleotide sequence