Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00689

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00688 and H281DRAFT_00689 are separated by 216 nucleotidesH281DRAFT_00689 and H281DRAFT_00690 are separated by 132 nucleotides H281DRAFT_00688: H281DRAFT_00688 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 769,747 to 771,585 _00688 H281DRAFT_00689: H281DRAFT_00689 - transcriptional regulator, AraC family, at 771,802 to 772,686 _00689 H281DRAFT_00690: H281DRAFT_00690 - NADPH:quinone reductase, at 772,819 to 773,781 _00690 Position (kb) 771 772 773Strain fitness (log2 ratio) -1 0 1at 770.846 kb on - strandat 771.749 kb on - strandat 772.508 kb on + strand, within H281DRAFT_00689at 772.860 kb on - strandat 773.383 kb on + strand, within H281DRAFT_00690at 773.384 kb on - strand, within H281DRAFT_00690at 773.591 kb on + strand, within H281DRAFT_00690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
remove
770,846 - +1.3
771,749 - -1.0
772,508 + H281DRAFT_00689 0.80 +0.1
772,860 - +0.1
773,383 + H281DRAFT_00690 0.59 +1.6
773,384 - H281DRAFT_00690 0.59 +0.8
773,591 + H281DRAFT_00690 0.80 +0.1

Or see this region's nucleotide sequence