Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00666 and H281DRAFT_00667 overlap by 4 nucleotides H281DRAFT_00667 and H281DRAFT_00668 are separated by 89 nucleotides
H281DRAFT_00666: H281DRAFT_00666 - altronate hydrolase, at 747,612 to 749,168
_00666
H281DRAFT_00667: H281DRAFT_00667 - Sugar phosphate permease, at 749,165 to 750,451
_00667
H281DRAFT_00668: H281DRAFT_00668 - tagaturonate reductase, at 750,541 to 751,674
_00668
Position (kb) 749
750
751 Strain fitness (log2 ratio) -1
0
1
2 at 748.636 kb on - strand, within H281DRAFT_00666 at 748.775 kb on - strand, within H281DRAFT_00666 at 748.947 kb on + strand, within H281DRAFT_00666 at 749.169 kb on - strand at 749.419 kb on + strand, within H281DRAFT_00667 at 749.508 kb on + strand, within H281DRAFT_00667 at 749.509 kb on - strand, within H281DRAFT_00667 at 749.725 kb on - strand, within H281DRAFT_00667 at 749.740 kb on + strand, within H281DRAFT_00667 at 749.741 kb on - strand, within H281DRAFT_00667 at 749.741 kb on - strand, within H281DRAFT_00667 at 750.115 kb on - strand, within H281DRAFT_00667 at 750.288 kb on + strand, within H281DRAFT_00667 at 750.393 kb on + strand at 750.464 kb on + strand at 750.464 kb on + strand at 750.465 kb on - strand at 750.465 kb on - strand at 750.468 kb on + strand at 750.468 kb on + strand at 750.468 kb on + strand at 750.542 kb on + strand at 750.543 kb on - strand at 750.593 kb on - strand at 750.834 kb on + strand, within H281DRAFT_00668 at 750.835 kb on - strand, within H281DRAFT_00668 at 750.921 kb on - strand, within H281DRAFT_00668 at 751.097 kb on + strand, within H281DRAFT_00668 at 751.159 kb on + strand, within H281DRAFT_00668 at 751.347 kb on + strand, within H281DRAFT_00668
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 748,636 - H281DRAFT_00666 0.66 +0.6 748,775 - H281DRAFT_00666 0.75 +0.6 748,947 + H281DRAFT_00666 0.86 +0.5 749,169 - -0.2 749,419 + H281DRAFT_00667 0.20 -0.5 749,508 + H281DRAFT_00667 0.27 +0.7 749,509 - H281DRAFT_00667 0.27 +0.6 749,725 - H281DRAFT_00667 0.44 +1.3 749,740 + H281DRAFT_00667 0.45 +1.5 749,741 - H281DRAFT_00667 0.45 -0.6 749,741 - H281DRAFT_00667 0.45 -0.6 750,115 - H281DRAFT_00667 0.74 -0.8 750,288 + H281DRAFT_00667 0.87 +0.8 750,393 + +0.6 750,464 + +0.0 750,464 + +0.0 750,465 - +0.1 750,465 - +0.2 750,468 + -0.1 750,468 + -0.6 750,468 + +2.3 750,542 + +0.0 750,543 - +1.0 750,593 - +0.9 750,834 + H281DRAFT_00668 0.26 +0.4 750,835 - H281DRAFT_00668 0.26 +0.5 750,921 - H281DRAFT_00668 0.34 +0.6 751,097 + H281DRAFT_00668 0.49 -0.3 751,159 + H281DRAFT_00668 0.54 -0.7 751,347 + H281DRAFT_00668 0.71 +0.8
Or see this region's nucleotide sequence