Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00585 and H281DRAFT_00586 overlap by 4 nucleotides H281DRAFT_00586 and H281DRAFT_00587 are separated by 10 nucleotides H281DRAFT_00587 and H281DRAFT_00588 are separated by 61 nucleotides
H281DRAFT_00585: H281DRAFT_00585 - DNA polymerase, at 651,693 to 652,901
_00585
H281DRAFT_00586: H281DRAFT_00586 - hypothetical protein, at 652,898 to 653,995
_00586
H281DRAFT_00587: H281DRAFT_00587 - hydroxymethylpyrimidine kinase /phosphomethylpyrimidine kinase, at 654,006 to 654,815
_00587
H281DRAFT_00588: H281DRAFT_00588 - Major Facilitator Superfamily protein, at 654,877 to 656,184
_00588
Position (kb) 652
653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 652.854 kb on - strand at 653.119 kb on + strand, within H281DRAFT_00586 at 653.356 kb on - strand, within H281DRAFT_00586 at 653.356 kb on - strand, within H281DRAFT_00586 at 653.405 kb on + strand, within H281DRAFT_00586 at 653.489 kb on + strand, within H281DRAFT_00586 at 653.489 kb on + strand, within H281DRAFT_00586 at 653.489 kb on + strand, within H281DRAFT_00586 at 653.489 kb on + strand, within H281DRAFT_00586 at 653.490 kb on - strand, within H281DRAFT_00586 at 653.639 kb on + strand, within H281DRAFT_00586 at 653.795 kb on + strand, within H281DRAFT_00586 at 653.796 kb on - strand, within H281DRAFT_00586 at 653.796 kb on - strand, within H281DRAFT_00586 at 653.884 kb on + strand, within H281DRAFT_00586 at 654.019 kb on + strand at 654.019 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 652,854 - +1.0 653,119 + H281DRAFT_00586 0.20 +0.5 653,356 - H281DRAFT_00586 0.42 +1.9 653,356 - H281DRAFT_00586 0.42 -0.3 653,405 + H281DRAFT_00586 0.46 -1.6 653,489 + H281DRAFT_00586 0.54 -0.6 653,489 + H281DRAFT_00586 0.54 +0.5 653,489 + H281DRAFT_00586 0.54 -0.3 653,489 + H281DRAFT_00586 0.54 +0.6 653,490 - H281DRAFT_00586 0.54 +0.5 653,639 + H281DRAFT_00586 0.67 +0.0 653,795 + H281DRAFT_00586 0.82 +0.7 653,796 - H281DRAFT_00586 0.82 -0.2 653,796 - H281DRAFT_00586 0.82 +0.5 653,884 + H281DRAFT_00586 0.90 -0.6 654,019 + -3.0 654,019 + -0.2
Or see this region's nucleotide sequence