Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00534 and H281DRAFT_00535 are separated by 32 nucleotides H281DRAFT_00535 and H281DRAFT_00536 overlap by 21 nucleotides H281DRAFT_00536 and H281DRAFT_00537 overlap by 14 nucleotides
H281DRAFT_00534: H281DRAFT_00534 - 50S ribosomal protein L16 3-hydroxylase, at 600,607 to 601,857
_00534
H281DRAFT_00535: H281DRAFT_00535 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD, at 601,890 to 602,435
_00535
H281DRAFT_00536: H281DRAFT_00536 - hypothetical protein, at 602,415 to 603,830
_00536
H281DRAFT_00537: H281DRAFT_00537 - DNA mismatch repair protein MutS, at 603,817 to 606,501
_00537
Position (kb) 602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2 at 601.572 kb on + strand, within H281DRAFT_00534 at 601.573 kb on - strand, within H281DRAFT_00534 at 601.704 kb on - strand, within H281DRAFT_00534 at 601.860 kb on + strand at 601.860 kb on + strand at 601.860 kb on + strand at 601.861 kb on - strand at 601.863 kb on - strand at 601.863 kb on - strand at 601.926 kb on + strand at 601.927 kb on - strand at 601.984 kb on - strand, within H281DRAFT_00535 at 601.998 kb on + strand, within H281DRAFT_00535 at 602.215 kb on - strand, within H281DRAFT_00535 at 602.805 kb on + strand at 602.806 kb on - strand, within H281DRAFT_00536 at 602.890 kb on - strand, within H281DRAFT_00536 at 602.963 kb on - strand, within H281DRAFT_00536 at 603.505 kb on + strand, within H281DRAFT_00536 at 603.506 kb on - strand, within H281DRAFT_00536 at 603.506 kb on - strand, within H281DRAFT_00536 at 603.662 kb on - strand, within H281DRAFT_00536 at 603.703 kb on - strand at 603.703 kb on - strand at 603.860 kb on + strand at 603.861 kb on - strand at 603.861 kb on - strand at 603.861 kb on - strand at 604.263 kb on - strand, within H281DRAFT_00537 at 604.263 kb on - strand, within H281DRAFT_00537 at 604.281 kb on + strand, within H281DRAFT_00537 at 604.532 kb on + strand, within H281DRAFT_00537 at 604.532 kb on + strand, within H281DRAFT_00537 at 604.533 kb on - strand, within H281DRAFT_00537 at 604.533 kb on - strand, within H281DRAFT_00537 at 604.590 kb on + strand, within H281DRAFT_00537 at 604.638 kb on + strand, within H281DRAFT_00537 at 604.639 kb on - strand, within H281DRAFT_00537
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 601,572 + H281DRAFT_00534 0.77 -1.4 601,573 - H281DRAFT_00534 0.77 -1.5 601,704 - H281DRAFT_00534 0.88 -0.1 601,860 + -0.5 601,860 + +1.2 601,860 + -0.7 601,861 - -0.4 601,863 - +0.7 601,863 - -1.2 601,926 + -2.3 601,927 - -0.0 601,984 - H281DRAFT_00535 0.17 -0.9 601,998 + H281DRAFT_00535 0.20 -0.7 602,215 - H281DRAFT_00535 0.60 +0.0 602,805 + +2.4 602,806 - H281DRAFT_00536 0.28 +1.2 602,890 - H281DRAFT_00536 0.34 -0.7 602,963 - H281DRAFT_00536 0.39 +2.5 603,505 + H281DRAFT_00536 0.77 -0.1 603,506 - H281DRAFT_00536 0.77 -0.5 603,506 - H281DRAFT_00536 0.77 -0.1 603,662 - H281DRAFT_00536 0.88 +1.8 603,703 - +1.0 603,703 - +0.2 603,860 + -0.9 603,861 - +0.1 603,861 - -0.0 603,861 - +0.4 604,263 - H281DRAFT_00537 0.17 +0.3 604,263 - H281DRAFT_00537 0.17 +1.0 604,281 + H281DRAFT_00537 0.17 -0.2 604,532 + H281DRAFT_00537 0.27 -0.4 604,532 + H281DRAFT_00537 0.27 +0.3 604,533 - H281DRAFT_00537 0.27 -0.2 604,533 - H281DRAFT_00537 0.27 -1.6 604,590 + H281DRAFT_00537 0.29 +0.3 604,638 + H281DRAFT_00537 0.31 -1.4 604,639 - H281DRAFT_00537 0.31 -0.3
Or see this region's nucleotide sequence