Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00067 and H281DRAFT_00068 are separated by 9 nucleotides H281DRAFT_00068 and H281DRAFT_00069 are separated by 424 nucleotides H281DRAFT_00069 and H281DRAFT_00070 are separated by 177 nucleotides
H281DRAFT_00067: H281DRAFT_00067 - transposase, IS4 family, at 67,486 to 68,394
_00067
H281DRAFT_00068: H281DRAFT_00068 - Transposase, at 68,404 to 68,931
_00068
H281DRAFT_00069: H281DRAFT_00069 - hypothetical protein, at 69,356 to 70,066
_00069
H281DRAFT_00070: H281DRAFT_00070 - hypothetical protein, at 70,244 to 71,071
_00070
Position (kb) 69
70
71 Strain fitness (log2 ratio) -1
0
1
2 at 68.406 kb on - strand at 68.720 kb on + strand, within H281DRAFT_00068 at 68.721 kb on - strand, within H281DRAFT_00068 at 68.721 kb on - strand, within H281DRAFT_00068 at 68.726 kb on + strand, within H281DRAFT_00068 at 68.726 kb on + strand, within H281DRAFT_00068 at 68.727 kb on - strand, within H281DRAFT_00068 at 68.728 kb on + strand, within H281DRAFT_00068 at 68.893 kb on + strand at 68.964 kb on + strand at 69.218 kb on + strand at 69.250 kb on + strand at 69.251 kb on - strand at 69.266 kb on + strand at 69.489 kb on - strand, within H281DRAFT_00069 at 70.128 kb on - strand at 70.248 kb on + strand at 70.260 kb on - strand at 70.894 kb on - strand, within H281DRAFT_00070
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 68,406 - +0.1 68,720 + H281DRAFT_00068 0.60 -1.4 68,721 - H281DRAFT_00068 0.60 +0.5 68,721 - H281DRAFT_00068 0.60 +1.1 68,726 + H281DRAFT_00068 0.61 -0.1 68,726 + H281DRAFT_00068 0.61 +1.2 68,727 - H281DRAFT_00068 0.61 -0.6 68,728 + H281DRAFT_00068 0.61 -0.7 68,893 + +1.4 68,964 + -0.2 69,218 + -0.7 69,250 + -0.2 69,251 - +0.3 69,266 + -0.3 69,489 - H281DRAFT_00069 0.19 +0.5 70,128 - +1.1 70,248 + -0.1 70,260 - +2.7 70,894 - H281DRAFT_00070 0.79 +0.6
Or see this region's nucleotide sequence