Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00040 and H281DRAFT_00041 overlap by 1 nucleotides H281DRAFT_00041 and H281DRAFT_00042 overlap by 14 nucleotides
H281DRAFT_00040: H281DRAFT_00040 - AraC-type DNA-binding protein, at 44,868 to 45,848
_00040
H281DRAFT_00041: H281DRAFT_00041 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 45,848 to 46,585
_00041
H281DRAFT_00042: H281DRAFT_00042 - hypothetical protein, at 46,572 to 46,778
_00042
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1
2 at 43.996 kb on + strand at 43.997 kb on - strand at 43.998 kb on + strand at 43.998 kb on + strand at 43.998 kb on + strand at 43.999 kb on - strand at 44.002 kb on + strand at 44.003 kb on - strand at 44.003 kb on - strand at 44.003 kb on - strand at 44.168 kb on + strand at 44.177 kb on - strand at 44.262 kb on - strand at 44.271 kb on + strand at 44.324 kb on + strand at 44.406 kb on + strand at 44.457 kb on - strand at 44.458 kb on + strand at 44.489 kb on - strand at 44.489 kb on - strand at 44.518 kb on + strand at 44.520 kb on + strand at 44.635 kb on - strand at 44.756 kb on + strand at 44.757 kb on - strand at 44.922 kb on + strand at 44.923 kb on - strand at 44.927 kb on - strand at 45.039 kb on - strand, within H281DRAFT_00040 at 45.114 kb on + strand, within H281DRAFT_00040 at 45.243 kb on + strand, within H281DRAFT_00040 at 45.246 kb on - strand, within H281DRAFT_00040 at 45.378 kb on - strand, within H281DRAFT_00040 at 45.423 kb on - strand, within H281DRAFT_00040 at 45.555 kb on - strand, within H281DRAFT_00040 at 45.577 kb on - strand, within H281DRAFT_00040 at 45.663 kb on + strand, within H281DRAFT_00040 at 45.664 kb on - strand, within H281DRAFT_00040 at 45.668 kb on + strand, within H281DRAFT_00040 at 45.668 kb on + strand, within H281DRAFT_00040 at 45.694 kb on - strand, within H281DRAFT_00040 at 45.694 kb on - strand, within H281DRAFT_00040 at 45.778 kb on + strand at 46.172 kb on - strand, within H281DRAFT_00041 at 46.406 kb on + strand, within H281DRAFT_00041 at 46.407 kb on - strand, within H281DRAFT_00041 at 46.513 kb on + strand at 46.602 kb on - strand, within H281DRAFT_00042 at 46.776 kb on + strand at 46.777 kb on - strand at 46.777 kb on - strand at 46.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 43,996 + -0.7 43,997 - +1.1 43,998 + -0.8 43,998 + -0.2 43,998 + +0.1 43,999 - -0.8 44,002 + -0.4 44,003 - +1.1 44,003 - +1.1 44,003 - -1.2 44,168 + -1.0 44,177 - -1.0 44,262 - +0.1 44,271 + +0.5 44,324 + +1.6 44,406 + -0.2 44,457 - +0.6 44,458 + -0.2 44,489 - +0.4 44,489 - +0.1 44,518 + -0.2 44,520 + +1.9 44,635 - -0.4 44,756 + -0.5 44,757 - -0.6 44,922 + -1.0 44,923 - +0.1 44,927 - +0.5 45,039 - H281DRAFT_00040 0.17 -0.4 45,114 + H281DRAFT_00040 0.25 -0.4 45,243 + H281DRAFT_00040 0.38 +0.3 45,246 - H281DRAFT_00040 0.39 +0.1 45,378 - H281DRAFT_00040 0.52 -0.3 45,423 - H281DRAFT_00040 0.57 -0.0 45,555 - H281DRAFT_00040 0.70 -1.2 45,577 - H281DRAFT_00040 0.72 +1.1 45,663 + H281DRAFT_00040 0.81 +0.2 45,664 - H281DRAFT_00040 0.81 -0.5 45,668 + H281DRAFT_00040 0.82 -0.4 45,668 + H281DRAFT_00040 0.82 -0.3 45,694 - H281DRAFT_00040 0.84 +0.2 45,694 - H281DRAFT_00040 0.84 -0.3 45,778 + +1.2 46,172 - H281DRAFT_00041 0.44 -0.4 46,406 + H281DRAFT_00041 0.76 -0.4 46,407 - H281DRAFT_00041 0.76 -0.7 46,513 + +1.0 46,602 - H281DRAFT_00042 0.14 +0.5 46,776 + +0.7 46,777 - +0.6 46,777 - -1.4 46,811 + +0.2
Or see this region's nucleotide sequence