Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02335 and AZOBR_RS02340 are separated by 174 nucleotides AZOBR_RS02340 and AZOBR_RS02345 are separated by 170 nucleotides AZOBR_RS02345 and AZOBR_RS02350 are separated by 77 nucleotides AZOBR_RS02350 and AZOBR_RS02355 are separated by 794 nucleotides
AZOBR_RS02335: AZOBR_RS02335 - peptide ABC transporter permease, at 482,547 to 483,407
_RS02335
AZOBR_RS02340: AZOBR_RS02340 - xanthine phosphoribosyltransferase, at 483,582 to 484,082
_RS02340
AZOBR_RS02345: AZOBR_RS02345 - tRNA-Arg, at 484,253 to 484,329
_RS02345
AZOBR_RS02350: AZOBR_RS02350 - hypothetical protein, at 484,407 to 484,586
_RS02350
AZOBR_RS02355: AZOBR_RS02355 - hypothetical protein, at 485,381 to 485,752
_RS02355
Position (kb) 484
485 Strain fitness (log2 ratio) -2
-1
0
1 at 483.715 kb on + strand, within AZOBR_RS02340 at 483.877 kb on + strand, within AZOBR_RS02340 at 483.877 kb on + strand, within AZOBR_RS02340 at 484.116 kb on - strand at 484.117 kb on + strand at 484.118 kb on - strand at 484.727 kb on + strand at 484.728 kb on - strand at 485.060 kb on - strand at 485.060 kb on - strand at 485.264 kb on + strand at 485.264 kb on + strand at 485.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 483,715 + AZOBR_RS02340 0.27 -1.0 483,877 + AZOBR_RS02340 0.59 -1.2 483,877 + AZOBR_RS02340 0.59 -1.8 484,116 - -0.2 484,117 + +0.3 484,118 - +0.3 484,727 + -0.3 484,728 - -1.2 485,060 - +1.1 485,060 - -0.1 485,264 + -0.2 485,264 + -0.7 485,264 + -0.2
Or see this region's nucleotide sequence