Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07950

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07945 and ABZR86_RS07950 are separated by 381 nucleotidesABZR86_RS07950 and ABZR86_RS07955 are separated by 164 nucleotides ABZR86_RS07945: ABZR86_RS07945 - hypothetical protein, at 1,763,597 to 1,764,511 _RS07945 ABZR86_RS07950: ABZR86_RS07950 - hypothetical protein, at 1,764,893 to 1,765,402 _RS07950 ABZR86_RS07955: ABZR86_RS07955 - TonB-dependent receptor, at 1,765,567 to 1,768,707 _RS07955 Position (kb) 1764 1765 1766Strain fitness (log2 ratio) -2 -1 0 1at 1763.967 kb on + strand, within ABZR86_RS07945at 1763.967 kb on + strand, within ABZR86_RS07945at 1763.968 kb on - strand, within ABZR86_RS07945at 1763.968 kb on - strand, within ABZR86_RS07945at 1763.968 kb on - strand, within ABZR86_RS07945at 1763.968 kb on - strand, within ABZR86_RS07945at 1763.974 kb on + strand, within ABZR86_RS07945at 1764.249 kb on + strand, within ABZR86_RS07945at 1764.511 kb on + strandat 1764.526 kb on + strandat 1764.596 kb on + strandat 1764.878 kb on + strandat 1764.878 kb on + strandat 1764.901 kb on - strandat 1764.994 kb on + strand, within ABZR86_RS07950at 1765.109 kb on - strand, within ABZR86_RS07950at 1765.232 kb on - strand, within ABZR86_RS07950at 1765.436 kb on - strandat 1765.599 kb on - strandat 1765.633 kb on - strandat 1765.696 kb on + strandat 1765.697 kb on - strandat 1765.697 kb on - strandat 1765.700 kb on + strandat 1765.701 kb on - strandat 1765.701 kb on - strandat 1765.794 kb on - strandat 1765.805 kb on + strandat 1765.805 kb on + strandat 1765.806 kb on - strandat 1765.826 kb on + strandat 1765.826 kb on + strandat 1765.827 kb on - strandat 1765.827 kb on - strandat 1765.872 kb on - strandat 1765.872 kb on - strandat 1765.937 kb on + strand, within ABZR86_RS07955at 1765.938 kb on - strand, within ABZR86_RS07955at 1765.968 kb on + strand, within ABZR86_RS07955at 1766.084 kb on + strand, within ABZR86_RS07955at 1766.085 kb on - strand, within ABZR86_RS07955at 1766.176 kb on + strand, within ABZR86_RS07955at 1766.176 kb on + strand, within ABZR86_RS07955at 1766.176 kb on + strand, within ABZR86_RS07955at 1766.177 kb on - strand, within ABZR86_RS07955at 1766.177 kb on - strand, within ABZR86_RS07955at 1766.180 kb on + strand, within ABZR86_RS07955at 1766.180 kb on + strand, within ABZR86_RS07955at 1766.200 kb on - strand, within ABZR86_RS07955at 1766.253 kb on - strand, within ABZR86_RS07955at 1766.371 kb on + strand, within ABZR86_RS07955at 1766.393 kb on + strand, within ABZR86_RS07955at 1766.397 kb on - strand, within ABZR86_RS07955

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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1,763,967 + ABZR86_RS07945 0.40 -0.2
1,763,967 + ABZR86_RS07945 0.40 +0.7
1,763,968 - ABZR86_RS07945 0.41 -1.1
1,763,968 - ABZR86_RS07945 0.41 +0.4
1,763,968 - ABZR86_RS07945 0.41 +0.1
1,763,968 - ABZR86_RS07945 0.41 +0.2
1,763,974 + ABZR86_RS07945 0.41 -0.1
1,764,249 + ABZR86_RS07945 0.71 +0.3
1,764,511 + -0.1
1,764,526 + +0.5
1,764,596 + +1.2
1,764,878 + +0.1
1,764,878 + +0.9
1,764,901 - -0.4
1,764,994 + ABZR86_RS07950 0.20 +0.8
1,765,109 - ABZR86_RS07950 0.42 -0.3
1,765,232 - ABZR86_RS07950 0.66 -0.1
1,765,436 - -0.3
1,765,599 - +0.0
1,765,633 - -0.6
1,765,696 + +0.1
1,765,697 - -0.0
1,765,697 - -0.5
1,765,700 + -0.7
1,765,701 - +0.4
1,765,701 - -0.1
1,765,794 - -0.1
1,765,805 + +0.0
1,765,805 + -0.0
1,765,806 - -0.2
1,765,826 + +1.4
1,765,826 + -0.6
1,765,827 - -0.2
1,765,827 - +0.1
1,765,872 - -0.1
1,765,872 - +0.5
1,765,937 + ABZR86_RS07955 0.12 +0.4
1,765,938 - ABZR86_RS07955 0.12 -2.0
1,765,968 + ABZR86_RS07955 0.13 -0.1
1,766,084 + ABZR86_RS07955 0.16 -0.3
1,766,085 - ABZR86_RS07955 0.16 +0.4
1,766,176 + ABZR86_RS07955 0.19 -0.0
1,766,176 + ABZR86_RS07955 0.19 -0.0
1,766,176 + ABZR86_RS07955 0.19 +0.2
1,766,177 - ABZR86_RS07955 0.19 +0.6
1,766,177 - ABZR86_RS07955 0.19 +0.3
1,766,180 + ABZR86_RS07955 0.20 +0.1
1,766,180 + ABZR86_RS07955 0.20 +0.3
1,766,200 - ABZR86_RS07955 0.20 +1.1
1,766,253 - ABZR86_RS07955 0.22 +0.4
1,766,371 + ABZR86_RS07955 0.26 +0.1
1,766,393 + ABZR86_RS07955 0.26 +0.9
1,766,397 - ABZR86_RS07955 0.26 +0.5

Or see this region's nucleotide sequence