Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS07925 and ABZR86_RS07930 overlap by 32 nucleotides ABZR86_RS07930 and ABZR86_RS07935 are separated by 7 nucleotides ABZR86_RS07935 and ABZR86_RS07940 are separated by 16 nucleotides ABZR86_RS07940 and ABZR86_RS07945 are separated by 168 nucleotides
ABZR86_RS07925: ABZR86_RS07925 - glycosyltransferase family 1 protein, at 1,760,213 to 1,761,373
_RS07925
ABZR86_RS07930: ABZR86_RS07930 - phosphatase PAP2 family protein, at 1,761,342 to 1,761,914
_RS07930
ABZR86_RS07935: ABZR86_RS07935 - 4'-phosphopantetheinyl transferase superfamily protein, at 1,761,922 to 1,762,608
_RS07935
ABZR86_RS07940: ABZR86_RS07940 - TetR/AcrR family transcriptional regulator, at 1,762,625 to 1,763,428
_RS07940
ABZR86_RS07945: ABZR86_RS07945 - hypothetical protein, at 1,763,597 to 1,764,511
_RS07945
Position (kb)
1761
1762
1763 Strain fitness (log2 ratio)
-1
0
1 at 1761.017 kb on + strand, within ABZR86_RS07925 at 1761.034 kb on - strand, within ABZR86_RS07925 at 1761.034 kb on - strand, within ABZR86_RS07925 at 1761.400 kb on + strand, within ABZR86_RS07930 at 1761.748 kb on - strand, within ABZR86_RS07930 at 1762.015 kb on + strand, within ABZR86_RS07935 at 1762.016 kb on - strand, within ABZR86_RS07935 at 1762.119 kb on - strand, within ABZR86_RS07935 at 1762.454 kb on + strand, within ABZR86_RS07935 at 1762.455 kb on - strand, within ABZR86_RS07935 at 1763.062 kb on - strand, within ABZR86_RS07940 at 1763.148 kb on - strand, within ABZR86_RS07940 at 1763.284 kb on - strand, within ABZR86_RS07940 at 1763.466 kb on - strand at 1763.521 kb on + strand at 1763.521 kb on + strand at 1763.522 kb on - strand at 1763.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 1,761,017 + ABZR86_RS07925 0.69 +0.5 1,761,034 - ABZR86_RS07925 0.71 -0.3 1,761,034 - ABZR86_RS07925 0.71 +0.0 1,761,400 + ABZR86_RS07930 0.10 -0.7 1,761,748 - ABZR86_RS07930 0.71 -0.5 1,762,015 + ABZR86_RS07935 0.14 -0.0 1,762,016 - ABZR86_RS07935 0.14 +0.5 1,762,119 - ABZR86_RS07935 0.29 +0.2 1,762,454 + ABZR86_RS07935 0.77 +0.7 1,762,455 - ABZR86_RS07935 0.78 +0.1 1,763,062 - ABZR86_RS07940 0.54 +0.6 1,763,148 - ABZR86_RS07940 0.65 -0.2 1,763,284 - ABZR86_RS07940 0.82 -0.0 1,763,466 - +0.3 1,763,521 + -0.6 1,763,521 + -0.1 1,763,522 - -0.0 1,763,599 - -0.1
Or see this region's nucleotide sequence