Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07935

Experiment: nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS07925 and ABZR86_RS07930 overlap by 32 nucleotidesABZR86_RS07930 and ABZR86_RS07935 are separated by 7 nucleotidesABZR86_RS07935 and ABZR86_RS07940 are separated by 16 nucleotidesABZR86_RS07940 and ABZR86_RS07945 are separated by 168 nucleotides ABZR86_RS07925: ABZR86_RS07925 - glycosyltransferase family 1 protein, at 1,760,213 to 1,761,373 _RS07925 ABZR86_RS07930: ABZR86_RS07930 - phosphatase PAP2 family protein, at 1,761,342 to 1,761,914 _RS07930 ABZR86_RS07935: ABZR86_RS07935 - 4'-phosphopantetheinyl transferase superfamily protein, at 1,761,922 to 1,762,608 _RS07935 ABZR86_RS07940: ABZR86_RS07940 - TetR/AcrR family transcriptional regulator, at 1,762,625 to 1,763,428 _RS07940 ABZR86_RS07945: ABZR86_RS07945 - hypothetical protein, at 1,763,597 to 1,764,511 _RS07945 Position (kb) 1761 1762 1763Strain fitness (log2 ratio) -1 0 1at 1761.017 kb on + strand, within ABZR86_RS07925at 1761.034 kb on - strand, within ABZR86_RS07925at 1761.034 kb on - strand, within ABZR86_RS07925at 1761.400 kb on + strand, within ABZR86_RS07930at 1761.748 kb on - strand, within ABZR86_RS07930at 1762.015 kb on + strand, within ABZR86_RS07935at 1762.016 kb on - strand, within ABZR86_RS07935at 1762.119 kb on - strand, within ABZR86_RS07935at 1762.454 kb on + strand, within ABZR86_RS07935at 1762.455 kb on - strand, within ABZR86_RS07935at 1763.062 kb on - strand, within ABZR86_RS07940at 1763.148 kb on - strand, within ABZR86_RS07940at 1763.284 kb on - strand, within ABZR86_RS07940at 1763.466 kb on - strandat 1763.521 kb on + strandat 1763.521 kb on + strandat 1763.522 kb on - strandat 1763.599 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
remove
1,761,017 + ABZR86_RS07925 0.69 +0.5
1,761,034 - ABZR86_RS07925 0.71 -0.3
1,761,034 - ABZR86_RS07925 0.71 +0.0
1,761,400 + ABZR86_RS07930 0.10 -0.7
1,761,748 - ABZR86_RS07930 0.71 -0.5
1,762,015 + ABZR86_RS07935 0.14 -0.0
1,762,016 - ABZR86_RS07935 0.14 +0.5
1,762,119 - ABZR86_RS07935 0.29 +0.2
1,762,454 + ABZR86_RS07935 0.77 +0.7
1,762,455 - ABZR86_RS07935 0.78 +0.1
1,763,062 - ABZR86_RS07940 0.54 +0.6
1,763,148 - ABZR86_RS07940 0.65 -0.2
1,763,284 - ABZR86_RS07940 0.82 -0.0
1,763,466 - +0.3
1,763,521 + -0.6
1,763,521 + -0.1
1,763,522 - -0.0
1,763,599 - -0.1

Or see this region's nucleotide sequence