Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00205 and ABZR86_RS00210 are separated by 40 nucleotides ABZR86_RS00210 and ABZR86_RS00215 are separated by 124 nucleotides ABZR86_RS00215 and ABZR86_RS00220 are separated by 188 nucleotides
ABZR86_RS00205: ABZR86_RS00205 - hypothetical protein, at 37,399 to 37,773
_RS00205
ABZR86_RS00210: ABZR86_RS00210 - VOC family protein, at 37,814 to 38,308
_RS00210
ABZR86_RS00215: ABZR86_RS00215 - biopolymer transporter ExbD, at 38,433 to 38,825
_RS00215
ABZR86_RS00220: ABZR86_RS00220 - DUF3014 domain-containing protein, at 39,014 to 39,889
_RS00220
Position (kb) 38
39 Strain fitness (log2 ratio) -1
0
1 at 37.771 kb on + strand at 37.771 kb on + strand at 37.772 kb on - strand at 37.772 kb on - strand at 37.956 kb on + strand, within ABZR86_RS00210 at 37.957 kb on - strand, within ABZR86_RS00210 at 38.231 kb on + strand, within ABZR86_RS00210 at 38.231 kb on + strand, within ABZR86_RS00210 at 38.231 kb on + strand, within ABZR86_RS00210 at 38.231 kb on + strand, within ABZR86_RS00210 at 38.231 kb on + strand, within ABZR86_RS00210 at 38.232 kb on - strand, within ABZR86_RS00210 at 38.232 kb on - strand, within ABZR86_RS00210 at 38.232 kb on - strand, within ABZR86_RS00210 at 38.232 kb on - strand, within ABZR86_RS00210 at 38.235 kb on + strand, within ABZR86_RS00210 at 38.235 kb on + strand, within ABZR86_RS00210 at 38.235 kb on + strand, within ABZR86_RS00210 at 38.235 kb on + strand, within ABZR86_RS00210 at 38.236 kb on - strand, within ABZR86_RS00210 at 38.236 kb on - strand, within ABZR86_RS00210 at 38.236 kb on - strand, within ABZR86_RS00210 at 38.236 kb on - strand, within ABZR86_RS00210 at 38.435 kb on - strand at 38.504 kb on - strand, within ABZR86_RS00215 at 38.905 kb on - strand at 39.092 kb on + strand at 39.092 kb on + strand at 39.092 kb on + strand at 39.092 kb on + strand at 39.092 kb on + strand at 39.092 kb on + strand at 39.093 kb on - strand at 39.093 kb on - strand at 39.093 kb on - strand at 39.093 kb on - strand at 39.096 kb on + strand at 39.097 kb on - strand at 39.097 kb on - strand at 39.097 kb on - strand at 39.488 kb on + strand, within ABZR86_RS00220 at 39.488 kb on + strand, within ABZR86_RS00220 at 39.488 kb on + strand, within ABZR86_RS00220 at 39.488 kb on + strand, within ABZR86_RS00220 at 39.488 kb on + strand, within ABZR86_RS00220 at 39.489 kb on - strand, within ABZR86_RS00220 at 39.536 kb on + strand, within ABZR86_RS00220 at 39.537 kb on - strand, within ABZR86_RS00220 at 39.545 kb on + strand, within ABZR86_RS00220 at 39.546 kb on - strand, within ABZR86_RS00220 at 39.548 kb on + strand, within ABZR86_RS00220 at 39.549 kb on - strand, within ABZR86_RS00220 at 39.569 kb on + strand, within ABZR86_RS00220 at 39.570 kb on - strand, within ABZR86_RS00220 at 39.682 kb on + strand, within ABZR86_RS00220 at 39.682 kb on + strand, within ABZR86_RS00220 at 39.686 kb on + strand, within ABZR86_RS00220 at 39.686 kb on + strand, within ABZR86_RS00220 at 39.686 kb on + strand, within ABZR86_RS00220 at 39.686 kb on + strand, within ABZR86_RS00220 at 39.686 kb on + strand, within ABZR86_RS00220 at 39.686 kb on + strand, within ABZR86_RS00220 at 39.686 kb on + strand, within ABZR86_RS00220 at 39.686 kb on + strand, within ABZR86_RS00220 at 39.686 kb on + strand, within ABZR86_RS00220 at 39.687 kb on - strand, within ABZR86_RS00220 at 39.687 kb on - strand, within ABZR86_RS00220 at 39.687 kb on - strand, within ABZR86_RS00220 at 39.689 kb on + strand, within ABZR86_RS00220 at 39.690 kb on - strand, within ABZR86_RS00220
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 37,771 + +0.2 37,771 + -0.1 37,772 - +0.2 37,772 - -0.3 37,956 + ABZR86_RS00210 0.29 +0.4 37,957 - ABZR86_RS00210 0.29 +0.2 38,231 + ABZR86_RS00210 0.84 +1.6 38,231 + ABZR86_RS00210 0.84 +0.5 38,231 + ABZR86_RS00210 0.84 -0.0 38,231 + ABZR86_RS00210 0.84 -0.2 38,231 + ABZR86_RS00210 0.84 +0.8 38,232 - ABZR86_RS00210 0.84 +0.7 38,232 - ABZR86_RS00210 0.84 +0.5 38,232 - ABZR86_RS00210 0.84 +0.3 38,232 - ABZR86_RS00210 0.84 -0.3 38,235 + ABZR86_RS00210 0.85 +0.5 38,235 + ABZR86_RS00210 0.85 -0.0 38,235 + ABZR86_RS00210 0.85 -0.8 38,235 + ABZR86_RS00210 0.85 -0.4 38,236 - ABZR86_RS00210 0.85 -0.8 38,236 - ABZR86_RS00210 0.85 +0.1 38,236 - ABZR86_RS00210 0.85 -0.2 38,236 - ABZR86_RS00210 0.85 +0.1 38,435 - -1.2 38,504 - ABZR86_RS00215 0.18 -0.0 38,905 - +0.1 39,092 + +0.7 39,092 + -0.2 39,092 + -0.2 39,092 + -0.0 39,092 + +0.4 39,092 + -0.0 39,093 - -0.1 39,093 - -1.1 39,093 - +0.5 39,093 - -0.7 39,096 + -0.8 39,097 - +0.6 39,097 - +0.3 39,097 - +0.3 39,488 + ABZR86_RS00220 0.54 -0.0 39,488 + ABZR86_RS00220 0.54 +1.0 39,488 + ABZR86_RS00220 0.54 +0.5 39,488 + ABZR86_RS00220 0.54 +0.5 39,488 + ABZR86_RS00220 0.54 +0.1 39,489 - ABZR86_RS00220 0.54 +0.1 39,536 + ABZR86_RS00220 0.60 +0.3 39,537 - ABZR86_RS00220 0.60 +0.4 39,545 + ABZR86_RS00220 0.61 +0.9 39,546 - ABZR86_RS00220 0.61 +0.5 39,548 + ABZR86_RS00220 0.61 +0.2 39,549 - ABZR86_RS00220 0.61 -0.4 39,569 + ABZR86_RS00220 0.63 +0.1 39,570 - ABZR86_RS00220 0.63 +0.1 39,682 + ABZR86_RS00220 0.76 +0.1 39,682 + ABZR86_RS00220 0.76 +0.0 39,686 + ABZR86_RS00220 0.77 +0.3 39,686 + ABZR86_RS00220 0.77 -0.6 39,686 + ABZR86_RS00220 0.77 +0.1 39,686 + ABZR86_RS00220 0.77 +0.8 39,686 + ABZR86_RS00220 0.77 -0.8 39,686 + ABZR86_RS00220 0.77 +0.2 39,686 + ABZR86_RS00220 0.77 +0.3 39,686 + ABZR86_RS00220 0.77 +0.4 39,686 + ABZR86_RS00220 0.77 -0.3 39,687 - ABZR86_RS00220 0.77 +0.3 39,687 - ABZR86_RS00220 0.77 -1.1 39,687 - ABZR86_RS00220 0.77 +0.7 39,689 + ABZR86_RS00220 0.77 +0.2 39,690 - ABZR86_RS00220 0.77 +0.9
Or see this region's nucleotide sequence