Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2081

Experiment: MoYLS4 with benzoic 0.54 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2081 and DvMF_2082 are separated by 139 nucleotides DvMF_2081: DvMF_2081 - chromosomal replication initiator protein DnaA (RefSeq), at 2,588,354 to 2,589,688 _2081 DvMF_2082: DvMF_2082 - DNA polymerase III, beta subunit (RefSeq), at 2,589,828 to 2,590,994 _2082 Position (kb) 2588 2589 2590Strain fitness (log2 ratio) -2 -1 0 1at 2587.362 kb on + strandat 2587.375 kb on - strandat 2587.375 kb on - strandat 2587.432 kb on + strandat 2587.442 kb on + strandat 2587.450 kb on - strandat 2587.466 kb on - strandat 2587.471 kb on - strandat 2587.521 kb on + strandat 2587.874 kb on + strandat 2587.989 kb on - strandat 2588.033 kb on - strandat 2588.068 kb on + strandat 2588.137 kb on - strandat 2588.163 kb on - strandat 2588.174 kb on + strandat 2588.384 kb on + strandat 2588.418 kb on + strandat 2588.438 kb on + strandat 2588.669 kb on + strand, within DvMF_2081at 2588.755 kb on + strand, within DvMF_2081at 2589.071 kb on + strand, within DvMF_2081at 2589.079 kb on - strand, within DvMF_2081at 2589.433 kb on + strand, within DvMF_2081at 2589.580 kb on - strandat 2589.692 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.54 mg/ml
remove
2,587,362 + -0.3
2,587,375 - -0.2
2,587,375 - -0.4
2,587,432 + -0.2
2,587,442 + -0.2
2,587,450 - +0.1
2,587,466 - -0.2
2,587,471 - -0.1
2,587,521 + -0.2
2,587,874 + -0.2
2,587,989 - -0.2
2,588,033 - -0.1
2,588,068 + +0.2
2,588,137 - -1.2
2,588,163 - -0.0
2,588,174 + -0.2
2,588,384 + -1.7
2,588,418 + -1.5
2,588,438 + -1.6
2,588,669 + DvMF_2081 0.24 -1.6
2,588,755 + DvMF_2081 0.30 -2.1
2,589,071 + DvMF_2081 0.54 -1.1
2,589,079 - DvMF_2081 0.54 -2.1
2,589,433 + DvMF_2081 0.81 -2.0
2,589,580 - -2.0
2,589,692 + -1.6

Or see this region's nucleotide sequence