Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1968

Experiment: MoYLS4 with benzoic 0.54 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1967 and DvMF_1968 are separated by 56 nucleotidesDvMF_1968 and DvMF_1969 are separated by 219 nucleotidesDvMF_1969 and DvMF_1970 are separated by 474 nucleotides DvMF_1967: DvMF_1967 - UvrD/REP helicase (RefSeq), at 2,430,284 to 2,432,653 _1967 DvMF_1968: DvMF_1968 - type I phosphodiesterase/nucleotide pyrophosphatase (RefSeq), at 2,432,710 to 2,434,473 _1968 DvMF_1969: DvMF_1969 - 4-oxalocrotonate tautomerase family enzyme (RefSeq), at 2,434,693 to 2,434,896 _1969 DvMF_1970: DvMF_1970 - hypothetical protein (RefSeq), at 2,435,371 to 2,435,865 _1970 Position (kb) 2432 2433 2434 2435Strain fitness (log2 ratio) -1 0 1at 2431.725 kb on + strand, within DvMF_1967at 2432.078 kb on + strand, within DvMF_1967at 2432.381 kb on + strand, within DvMF_1967at 2432.742 kb on - strandat 2432.802 kb on - strandat 2432.925 kb on + strand, within DvMF_1968at 2433.014 kb on - strand, within DvMF_1968at 2433.030 kb on + strand, within DvMF_1968at 2433.042 kb on - strand, within DvMF_1968at 2433.130 kb on + strand, within DvMF_1968at 2433.202 kb on - strand, within DvMF_1968at 2433.212 kb on - strand, within DvMF_1968at 2433.289 kb on + strand, within DvMF_1968at 2433.556 kb on + strand, within DvMF_1968at 2433.657 kb on - strand, within DvMF_1968at 2433.737 kb on + strand, within DvMF_1968at 2433.756 kb on - strandat 2433.756 kb on - strand, within DvMF_1968at 2433.924 kb on - strand, within DvMF_1968at 2433.937 kb on + strand, within DvMF_1968at 2433.983 kb on - strand, within DvMF_1968at 2433.983 kb on - strand, within DvMF_1968at 2434.243 kb on - strand, within DvMF_1968at 2434.260 kb on - strand, within DvMF_1968at 2434.374 kb on + strandat 2434.374 kb on + strandat 2434.390 kb on - strandat 2434.482 kb on - strandat 2434.745 kb on - strand, within DvMF_1969at 2435.138 kb on + strandat 2435.143 kb on + strandat 2435.143 kb on + strandat 2435.176 kb on + strandat 2435.176 kb on + strandat 2435.184 kb on - strandat 2435.184 kb on - strandat 2435.212 kb on - strandat 2435.245 kb on - strandat 2435.330 kb on + strandat 2435.330 kb on + strandat 2435.414 kb on + strandat 2435.427 kb on - strand, within DvMF_1970at 2435.460 kb on + strand, within DvMF_1970at 2435.463 kb on - strand, within DvMF_1970

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.54 mg/ml
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2,431,725 + DvMF_1967 0.61 -0.7
2,432,078 + DvMF_1967 0.76 -0.9
2,432,381 + DvMF_1967 0.88 +0.1
2,432,742 - -0.4
2,432,802 - -0.2
2,432,925 + DvMF_1968 0.12 -0.2
2,433,014 - DvMF_1968 0.17 -0.5
2,433,030 + DvMF_1968 0.18 -0.2
2,433,042 - DvMF_1968 0.19 +0.1
2,433,130 + DvMF_1968 0.24 +0.2
2,433,202 - DvMF_1968 0.28 -0.3
2,433,212 - DvMF_1968 0.28 -0.1
2,433,289 + DvMF_1968 0.33 -0.0
2,433,556 + DvMF_1968 0.48 +0.1
2,433,657 - DvMF_1968 0.54 +0.1
2,433,737 + DvMF_1968 0.58 -0.2
2,433,756 - -0.6
2,433,756 - DvMF_1968 0.59 -0.1
2,433,924 - DvMF_1968 0.69 +0.1
2,433,937 + DvMF_1968 0.70 -0.1
2,433,983 - DvMF_1968 0.72 -0.1
2,433,983 - DvMF_1968 0.72 -0.1
2,434,243 - DvMF_1968 0.87 -0.4
2,434,260 - DvMF_1968 0.88 +0.0
2,434,374 + -0.2
2,434,374 + -0.2
2,434,390 - -0.1
2,434,482 - -0.3
2,434,745 - DvMF_1969 0.25 -0.1
2,435,138 + -0.1
2,435,143 + +0.1
2,435,143 + -0.6
2,435,176 + -0.4
2,435,176 + -0.4
2,435,184 - -0.4
2,435,184 - -0.3
2,435,212 - -0.1
2,435,245 - -0.4
2,435,330 + -0.2
2,435,330 + -0.8
2,435,414 + -0.0
2,435,427 - DvMF_1970 0.11 -0.2
2,435,460 + DvMF_1970 0.18 -0.4
2,435,463 - DvMF_1970 0.19 -0.2

Or see this region's nucleotide sequence