Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1932

Experiment: MoYLS4 with benzoic 0.54 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1931 and DvMF_1932 are separated by 84 nucleotidesDvMF_1932 and DvMF_1933 are separated by 465 nucleotides DvMF_1931: DvMF_1931 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,381,132 to 2,383,054 _1931 DvMF_1932: DvMF_1932 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 2,383,139 to 2,384,146 _1932 DvMF_1933: DvMF_1933 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,384,612 to 2,386,036 _1933 Position (kb) 2383 2384 2385Strain fitness (log2 ratio) -1 0 1at 2382.276 kb on - strand, within DvMF_1931at 2382.652 kb on + strand, within DvMF_1931at 2382.668 kb on - strand, within DvMF_1931at 2383.161 kb on + strandat 2383.201 kb on - strandat 2383.324 kb on + strand, within DvMF_1932at 2383.494 kb on - strand, within DvMF_1932at 2383.572 kb on - strand, within DvMF_1932at 2383.644 kb on + strand, within DvMF_1932at 2383.652 kb on - strand, within DvMF_1932at 2383.786 kb on - strand, within DvMF_1932at 2383.816 kb on - strand, within DvMF_1932at 2383.838 kb on - strand, within DvMF_1932at 2384.019 kb on - strand, within DvMF_1932at 2384.106 kb on + strandat 2384.257 kb on - strandat 2384.338 kb on - strandat 2384.911 kb on - strand, within DvMF_1933

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.54 mg/ml
remove
2,382,276 - DvMF_1931 0.59 -0.3
2,382,652 + DvMF_1931 0.79 -0.1
2,382,668 - DvMF_1931 0.80 -0.3
2,383,161 + -0.4
2,383,201 - -0.3
2,383,324 + DvMF_1932 0.18 -0.3
2,383,494 - DvMF_1932 0.35 -0.1
2,383,572 - DvMF_1932 0.43 -0.0
2,383,644 + DvMF_1932 0.50 +0.0
2,383,652 - DvMF_1932 0.51 -0.1
2,383,786 - DvMF_1932 0.64 +0.2
2,383,816 - DvMF_1932 0.67 -0.1
2,383,838 - DvMF_1932 0.69 -0.2
2,384,019 - DvMF_1932 0.87 +0.5
2,384,106 + -0.1
2,384,257 - -0.3
2,384,338 - -0.2
2,384,911 - DvMF_1933 0.21 -0.2

Or see this region's nucleotide sequence