Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3734

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3733 and Shewana3_3734 are separated by 9 nucleotidesShewana3_3734 and Shewana3_R0128 are separated by 232 nucleotidesShewana3_R0128 and Shewana3_R0129 are separated by 125 nucleotides Shewana3_3733: Shewana3_3733 - diguanylate cyclase (RefSeq), at 4,474,035 to 4,475,912 _3733 Shewana3_3734: Shewana3_3734 - delta-aminolevulinic acid dehydratase (RefSeq), at 4,475,922 to 4,476,932 _3734 Shewana3_R0128: Shewana3_R0128 - 5S ribosomal RNA (RefSeq), at 4,477,165 to 4,477,284 _R0128 Shewana3_R0129: Shewana3_R0129 - 23S ribosomal RNA (RefSeq), at 4,477,410 to 4,480,304 _R0129 Position (kb) 4475 4476 4477Strain fitness (log2 ratio) -1 0 1 2at 4474.938 kb on - strand, within Shewana3_3733at 4474.948 kb on - strand, within Shewana3_3733at 4474.965 kb on + strand, within Shewana3_3733at 4475.033 kb on + strand, within Shewana3_3733at 4475.214 kb on - strand, within Shewana3_3733at 4475.319 kb on + strand, within Shewana3_3733at 4475.352 kb on - strand, within Shewana3_3733at 4475.645 kb on - strand, within Shewana3_3733at 4476.178 kb on - strand, within Shewana3_3734at 4476.453 kb on + strand, within Shewana3_3734at 4476.494 kb on - strand, within Shewana3_3734at 4476.533 kb on - strand, within Shewana3_3734at 4476.535 kb on + strand, within Shewana3_3734at 4476.747 kb on + strand, within Shewana3_3734

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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4,474,938 - Shewana3_3733 0.48 +0.7
4,474,948 - Shewana3_3733 0.49 -0.1
4,474,965 + Shewana3_3733 0.50 -1.3
4,475,033 + Shewana3_3733 0.53 -1.5
4,475,214 - Shewana3_3733 0.63 -0.8
4,475,319 + Shewana3_3733 0.68 -0.3
4,475,352 - Shewana3_3733 0.70 +0.5
4,475,645 - Shewana3_3733 0.86 -1.2
4,476,178 - Shewana3_3734 0.25 +1.9
4,476,453 + Shewana3_3734 0.53 +0.8
4,476,494 - Shewana3_3734 0.57 +1.3
4,476,533 - Shewana3_3734 0.60 -0.6
4,476,535 + Shewana3_3734 0.61 -0.5
4,476,747 + Shewana3_3734 0.82 +1.1

Or see this region's nucleotide sequence