Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3722

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3720 and Shewana3_3721 are separated by 73 nucleotidesShewana3_3721 and Shewana3_3722 are separated by 356 nucleotidesShewana3_3722 and Shewana3_3723 are separated by 317 nucleotidesShewana3_3723 and Shewana3_3724 are separated by 130 nucleotides Shewana3_3720: Shewana3_3720 - hypothetical protein (RefSeq), at 4,463,658 to 4,464,698 _3720 Shewana3_3721: Shewana3_3721 - phosphoesterase, PA-phosphatase related (RefSeq), at 4,464,772 to 4,465,284 _3721 Shewana3_3722: Shewana3_3722 - uroporphyrinogen decarboxylase (RefSeq), at 4,465,641 to 4,465,895 _3722 Shewana3_3723: Shewana3_3723 - ribonuclease activity regulator protein RraA (RefSeq), at 4,466,213 to 4,466,698 _3723 Shewana3_3724: Shewana3_3724 - arginase/agmatinase/formiminoglutamase (RefSeq), at 4,466,829 to 4,467,881 _3724 Position (kb) 4465 4466Strain fitness (log2 ratio) -2 -1 0 1at 4464.672 kb on + strandat 4464.672 kb on + strandat 4464.672 kb on + strandat 4464.680 kb on - strandat 4464.715 kb on - strandat 4465.119 kb on + strand, within Shewana3_3721at 4465.119 kb on + strand, within Shewana3_3721at 4465.127 kb on - strand, within Shewana3_3721at 4465.127 kb on - strand, within Shewana3_3721at 4465.145 kb on - strand, within Shewana3_3721at 4465.204 kb on + strand, within Shewana3_3721at 4465.204 kb on + strand, within Shewana3_3721at 4465.212 kb on - strand, within Shewana3_3721at 4465.212 kb on - strand, within Shewana3_3721at 4465.212 kb on - strand, within Shewana3_3721at 4465.222 kb on - strand, within Shewana3_3721at 4465.409 kb on - strandat 4465.414 kb on - strandat 4465.457 kb on + strandat 4465.457 kb on + strandat 4465.465 kb on - strandat 4465.770 kb on - strand, within Shewana3_3722at 4465.897 kb on + strandat 4465.913 kb on - strandat 4466.108 kb on + strandat 4466.226 kb on + strandat 4466.226 kb on + strandat 4466.226 kb on + strandat 4466.234 kb on - strandat 4466.234 kb on - strandat 4466.339 kb on + strand, within Shewana3_3723at 4466.348 kb on + strand, within Shewana3_3723at 4466.624 kb on - strand, within Shewana3_3723at 4466.688 kb on + strandat 4466.798 kb on + strandat 4466.876 kb on - strandat 4466.878 kb on + strandat 4466.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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4,464,672 + -0.8
4,464,672 + -1.5
4,464,672 + -0.8
4,464,680 - +0.0
4,464,715 - -0.7
4,465,119 + Shewana3_3721 0.68 -0.6
4,465,119 + Shewana3_3721 0.68 -2.2
4,465,127 - Shewana3_3721 0.69 +0.3
4,465,127 - Shewana3_3721 0.69 +0.8
4,465,145 - Shewana3_3721 0.73 +0.5
4,465,204 + Shewana3_3721 0.84 -0.5
4,465,204 + Shewana3_3721 0.84 -0.8
4,465,212 - Shewana3_3721 0.86 -0.4
4,465,212 - Shewana3_3721 0.86 +0.1
4,465,212 - Shewana3_3721 0.86 +0.0
4,465,222 - Shewana3_3721 0.88 +0.5
4,465,409 - +0.8
4,465,414 - -0.1
4,465,457 + +0.1
4,465,457 + -0.1
4,465,465 - +0.7
4,465,770 - Shewana3_3722 0.51 +0.8
4,465,897 + +0.4
4,465,913 - +0.3
4,466,108 + +0.9
4,466,226 + +0.5
4,466,226 + +0.4
4,466,226 + +0.9
4,466,234 - -0.4
4,466,234 - -0.2
4,466,339 + Shewana3_3723 0.26 +1.1
4,466,348 + Shewana3_3723 0.28 +0.9
4,466,624 - Shewana3_3723 0.85 -1.9
4,466,688 + +0.7
4,466,798 + -0.5
4,466,876 - -0.1
4,466,878 + +0.1
4,466,878 + +0.2

Or see this region's nucleotide sequence