Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3687 and Shewana3_3688 are separated by 485 nucleotides Shewana3_3688 and Shewana3_3689 are separated by 178 nucleotides
Shewana3_3687: Shewana3_3687 - short-chain dehydrogenase/reductase SDR (RefSeq), at 4,426,470 to 4,427,201
_3687
Shewana3_3688: Shewana3_3688 - cytochrome c family protein (RefSeq), at 4,427,687 to 4,428,016
_3688
Shewana3_3689: Shewana3_3689 - hypothetical protein (RefSeq), at 4,428,195 to 4,429,925
_3689
Position (kb)
4427
4428
4429 Strain fitness (log2 ratio)
-2
-1
0
1 at 4426.805 kb on + strand, within Shewana3_3687 at 4426.871 kb on - strand, within Shewana3_3687 at 4426.878 kb on + strand, within Shewana3_3687 at 4426.895 kb on - strand, within Shewana3_3687 at 4426.981 kb on + strand, within Shewana3_3687 at 4427.012 kb on + strand, within Shewana3_3687 at 4427.025 kb on - strand, within Shewana3_3687 at 4427.066 kb on - strand, within Shewana3_3687 at 4427.087 kb on - strand, within Shewana3_3687 at 4427.203 kb on - strand at 4427.770 kb on - strand, within Shewana3_3688 at 4427.963 kb on - strand, within Shewana3_3688 at 4428.046 kb on + strand at 4428.054 kb on - strand at 4428.073 kb on - strand at 4428.119 kb on + strand at 4428.127 kb on - strand at 4428.127 kb on - strand at 4428.127 kb on - strand at 4428.204 kb on + strand at 4428.239 kb on + strand at 4428.247 kb on - strand at 4428.323 kb on - strand at 4428.356 kb on - strand at 4428.453 kb on + strand, within Shewana3_3689 at 4428.461 kb on - strand, within Shewana3_3689 at 4428.625 kb on - strand, within Shewana3_3689 at 4428.699 kb on + strand, within Shewana3_3689 at 4428.706 kb on - strand, within Shewana3_3689 at 4428.761 kb on + strand, within Shewana3_3689 at 4428.769 kb on + strand, within Shewana3_3689 at 4428.769 kb on + strand, within Shewana3_3689 at 4428.769 kb on + strand, within Shewana3_3689 at 4428.769 kb on + strand, within Shewana3_3689 at 4428.777 kb on - strand, within Shewana3_3689 at 4428.827 kb on + strand, within Shewana3_3689 at 4428.842 kb on + strand, within Shewana3_3689 at 4428.847 kb on + strand, within Shewana3_3689 at 4428.850 kb on - strand, within Shewana3_3689 at 4428.855 kb on - strand, within Shewana3_3689 at 4428.983 kb on - strand, within Shewana3_3689
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 4,426,805 + Shewana3_3687 0.46 -0.9 4,426,871 - Shewana3_3687 0.55 +0.5 4,426,878 + Shewana3_3687 0.56 +0.7 4,426,895 - Shewana3_3687 0.58 +0.4 4,426,981 + Shewana3_3687 0.70 +0.3 4,427,012 + Shewana3_3687 0.74 -0.2 4,427,025 - Shewana3_3687 0.76 +0.6 4,427,066 - Shewana3_3687 0.81 +0.3 4,427,087 - Shewana3_3687 0.84 +1.1 4,427,203 - -1.4 4,427,770 - Shewana3_3688 0.25 +0.1 4,427,963 - Shewana3_3688 0.84 -2.7 4,428,046 + -2.0 4,428,054 - +0.1 4,428,073 - +0.4 4,428,119 + -0.4 4,428,127 - -0.3 4,428,127 - -1.2 4,428,127 - +0.2 4,428,204 + +0.5 4,428,239 + -2.1 4,428,247 - +0.2 4,428,323 - +0.7 4,428,356 - +0.6 4,428,453 + Shewana3_3689 0.15 +0.1 4,428,461 - Shewana3_3689 0.15 +0.3 4,428,625 - Shewana3_3689 0.25 +0.5 4,428,699 + Shewana3_3689 0.29 +0.1 4,428,706 - Shewana3_3689 0.30 +0.3 4,428,761 + Shewana3_3689 0.33 -0.3 4,428,769 + Shewana3_3689 0.33 -0.4 4,428,769 + Shewana3_3689 0.33 -0.0 4,428,769 + Shewana3_3689 0.33 -0.4 4,428,769 + Shewana3_3689 0.33 -0.2 4,428,777 - Shewana3_3689 0.34 +0.1 4,428,827 + Shewana3_3689 0.37 -0.3 4,428,842 + Shewana3_3689 0.37 +0.3 4,428,847 + Shewana3_3689 0.38 +0.6 4,428,850 - Shewana3_3689 0.38 -0.3 4,428,855 - Shewana3_3689 0.38 +0.6 4,428,983 - Shewana3_3689 0.46 +0.3
Or see this region's nucleotide sequence