Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3628

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3627 and Shewana3_3628 are separated by 272 nucleotidesShewana3_3628 and Shewana3_3629 are separated by 254 nucleotides Shewana3_3627: Shewana3_3627 - MiaB-like tRNA modifying enzyme YliG (RefSeq), at 4,354,424 to 4,355,866 _3627 Shewana3_3628: Shewana3_3628 - hypothetical protein (RefSeq), at 4,356,139 to 4,356,396 _3628 Shewana3_3629: Shewana3_3629 - hypothetical protein (RefSeq), at 4,356,651 to 4,357,496 _3629 Position (kb) 4356 4357Strain fitness (log2 ratio) -2 -1 0 1at 4355.196 kb on - strand, within Shewana3_3627at 4355.227 kb on + strand, within Shewana3_3627at 4355.303 kb on + strand, within Shewana3_3627at 4355.380 kb on - strand, within Shewana3_3627at 4355.517 kb on + strand, within Shewana3_3627at 4355.691 kb on + strand, within Shewana3_3627at 4355.804 kb on + strandat 4355.825 kb on + strandat 4355.874 kb on + strandat 4355.882 kb on - strandat 4355.902 kb on - strandat 4355.994 kb on + strandat 4355.998 kb on - strandat 4356.031 kb on + strandat 4356.129 kb on - strandat 4356.334 kb on + strand, within Shewana3_3628at 4356.381 kb on + strandat 4356.388 kb on - strandat 4356.455 kb on + strandat 4356.461 kb on - strandat 4356.477 kb on + strandat 4356.614 kb on + strandat 4356.816 kb on + strand, within Shewana3_3629at 4356.829 kb on + strand, within Shewana3_3629at 4357.239 kb on - strand, within Shewana3_3629at 4357.239 kb on - strand, within Shewana3_3629at 4357.268 kb on + strand, within Shewana3_3629at 4357.340 kb on + strand, within Shewana3_3629at 4357.348 kb on - strand, within Shewana3_3629

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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4,355,196 - Shewana3_3627 0.53 -1.9
4,355,227 + Shewana3_3627 0.56 -0.0
4,355,303 + Shewana3_3627 0.61 +0.4
4,355,380 - Shewana3_3627 0.66 -0.3
4,355,517 + Shewana3_3627 0.76 +0.1
4,355,691 + Shewana3_3627 0.88 +0.8
4,355,804 + +0.7
4,355,825 + +0.7
4,355,874 + +0.7
4,355,882 - -1.3
4,355,902 - +0.5
4,355,994 + +0.2
4,355,998 - +0.0
4,356,031 + +0.2
4,356,129 - -0.2
4,356,334 + Shewana3_3628 0.76 -1.5
4,356,381 + +1.5
4,356,388 - +0.7
4,356,455 + -1.1
4,356,461 - -1.0
4,356,477 + +0.7
4,356,614 + +0.2
4,356,816 + Shewana3_3629 0.20 -0.2
4,356,829 + Shewana3_3629 0.21 +0.9
4,357,239 - Shewana3_3629 0.70 -0.4
4,357,239 - Shewana3_3629 0.70 -0.2
4,357,268 + Shewana3_3629 0.73 -0.7
4,357,340 + Shewana3_3629 0.81 -2.2
4,357,348 - Shewana3_3629 0.82 -0.3

Or see this region's nucleotide sequence